Pecten maximus (king scallop): 117325972
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Entry
117325972 CDS
T07399
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pmax
Pecten maximus (king scallop)
Pathway
pmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117325972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmax03019
]
117325972
03041 Spliceosome [BR:
pmax03041
]
117325972
03009 Ribosome biogenesis [BR:
pmax03009
]
117325972
03016 Transfer RNA biogenesis [BR:
pmax03016
]
117325972
Enzymes [BR:
pmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117325972
Messenger RNA biogenesis [BR:
pmax03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
117325972
Spliceosome [BR:
pmax03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117325972
Complex C
U4/U6.U5 tri-SnRNP related factors
117325972
Ribosome biogenesis [BR:
pmax03009
]
Eukaryotic type
Pre-60S particles
Helicases
117325972
Transfer RNA biogenesis [BR:
pmax03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
117325972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
117325972
NCBI-ProteinID:
XP_033738403
LinkDB
All DBs
Position
4:complement(36231575..36259239)
Genome browser
AA seq
1030 aa
AA seq
DB search
MADAFGDDLFNVFEDKEGATTTDTGTGELPKGTTDSKKSDAQRTDDLLKSIVGKRTADDD
DNENNPTKKAKAVPQDLGPTDVMPRIQIHRVDTVEACQHEVAIPPEAEFVPLKAASTTPA
KEYPFILDPFQKEALLCLENNQSVLVSAHTSAGKTVVAVYAIAMSLRDKQRVIYTTPIKA
LSNQKYRELFEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVGWVVFDE
IHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRP
TPLQHYIFPSGGDGIHLVVDENGEFREENFNTAMSVLRDAGDASKGDKWGRRGGAKGNET
NCFKIVKMIMERSFAPVIVFSFSKKDCEAYAMQMAKLDFNTEEEKTLVEEVFNNAIDNLS
DDDKKLPQVEHVLPLLRKGVGIHHSGLLPLLKETIEILFSEGLIKALFATETFAMGLNMP
ARTVLFTSARKFDGKDFRWLTSGEYIQMSGRAGRRGLDDRGIVILMVDEKMSPQAGKTVV
KGLADPLNSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYAAIPDLCDKLKKLEEDY
ANVQVPNEEQVGPYYKIRQQLDNLGKELLQYIQKPQYLLPFLQPGRVIKVKNGEDDFGYG
VLVNLQKKSNQKKSVETSDAVYVAEVLLNLTKESARQRNISSIQPCPQGSRGEMQVVPVV
TSLIQSVSAVRLYIPQDLRPSDNRQSVSKSLQEVERRFPDGVPLLDPIEDMGIKEKGLKE
IVKKIEAFEHRMYSHPLHKDPRLEEYYKEYEKKAKVGNDVKAIKLELKKKKSLLQMDELK
CRKRVLRRLGYCTASDVIELKGRVACEISSGDELLLTELLFNGVFNDLTTQQTCALMSCF
VFQEKSNEMPKLTEALSGPLRIMQDTARRIARVSREAKIEIDEEQYVESFKPHMMDIVNA
WCNGSTFAEICKMSDIFEGSIIRCMRRLEETLRQMCQAAKAIGNTELENKFAESIRSIKR
DIVFAASLYL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgcctttggtgatgacctcttcaacgtttttgaagacaaagaaggggcgacc
acaactgacactggcactggagaacttccaaaaggaaccacagattcgaaaaagtccgac
gctcagcgaactgatgacctattgaagagcattgttggtaaaagaactgctgatgatgat
gacaatgaaaataatccaacgaaaaaagccaaggcagttccccaagaccttgggccaact
gacgttatgcccaggattcaaatccacagagtagatactgttgaagcctgtcaacatgaa
gttgcaattccaccagaagcagagtttgttcccctgaaggcagcatcgaccacacctgcc
aaagagtatccatttatcttggatccattccaaaaggaggctctcttatgtctcgaaaac
aaccaatctgtgctggtgtccgcacatacgtctgctggcaagactgtggttgctgtgtat
gccatagctatgtcactgcgagataaacagcgtgttatctacaccacacccatcaaggcc
ctcagtaaccagaaataccgtgaactgtttgaggagtttcaggatgtcggactcatgact
ggtgatgttacgatcaaccccactgctagctgtctcgtcatgacaactgagatcctgcgg
agtatgttgtacagaggctcggaaatcatgagggaagtgggctgggtcgtatttgatgaa
attcattatatgcgagataaagaaaggggtgtagtctgggaggagactatcattctactt
cctgataacgtccattatgtgttcttgtctgccaccattcccaacgcacgacagtttgca
gagtggatctgtcatttacacaaacagccttgtcatgtggtgtacacagactacagaccc
acacccttacaacactacatattcccctctggaggtgatggcattcatcttgttgtggat
gaaaacggtgagttccgagaagagaatttcaacactgccatgtccgtgttaagagacgcg
ggagatgcctctaagggagataaatggggacgacgaggtggagccaaaggcaatgagaca
aactgctttaagattgtgaagatgattatggagcggagctttgcccctgtcatcgtgttc
agttttagtaagaaggattgcgaggcatacgccatgcaaatggcaaagctagatttcaat
acagaggaagaaaagacattagtcgaagaggtgttcaacaatgcaatcgacaacttgtcc
gatgatgacaaaaaactgcctcaggtggagcatgtgctgccattattgaggaaaggtgtg
ggtatccatcactccggtctactgccccttctcaaggaaaccatagaaattctcttctca
gaagggcttattaaggcactctttgctacagagacatttgcaatggggctcaacatgccg
gctagaactgtgctattcacaagtgcaaggaaatttgatgggaaagatttccgatggctg
acatcaggggagtacattcagatgagtggtcgagctggacgtagaggcctcgacgaccgt
ggaattgtcattctgatggtggatgaaaaaatgagtcctcaagcaggcaaaactgttgtc
aagggtttagctgaccctctgaactccgccttccacttgacttacaacatggtgttgaat
ttactgcgagtggaggagattaacccggagtacatgctggaacgctccttctatcaattc
cagaactatgcagccattcctgatctctgtgacaaattgaagaagttggaggaagattat
gctaatgtacaggttccaaacgaagagcaggtcggaccttactataaaatacgacaacag
ttagacaatctgggcaaggagcttctacagtatatacagaaaccacagtacctactgccc
ttcttacaaccaggcagggtcatcaaggtgaaaaatggagaggatgactttggctatgga
gtacttgtcaacctacagaagaagtccaaccagaagaaatcagtagagacgtctgatgca
gtatacgtggccgaagtcttactgaacctgacgaaggagagtgcccgccaacgtaatata
tcctccatacagccctgtcctcaaggctcacgaggtgaaatgcaggttgtacctgtggtc
actagtcttatccagtccgtcagcgctgtgagactttacatcccacaagacctacgtcca
agtgacaacagacagagcgtgtccaaatccctccaggaagtagagcgacggttccctgac
ggagtaccgctactcgaccccatagaggacatgggcatcaaggagaaaggtctgaaagaa
atagtcaagaaaatcgaagcatttgaacacaggatgtactcacatccactccacaaagat
ccccgcctggaggagtactataaggagtatgagaagaaggccaaggtggggaatgatgtg
aaagcaattaagttggagcttaagaaaaagaagtcgctgcttcagatggatgaattgaag
tgtcgcaagcgggtcttacgacgccttggttactgtactgcctctgatgtcatagaactc
aagggtagggtggcttgtgagattagcagtggagacgaattactactgacagaactcctc
ttcaatggtgtattcaatgacctgacaacccaacagacgtgtgctctcatgagttgtttt
gtctttcaagaaaaatccaatgagatgcctaaactgaccgaggctttgtccgggcctctt
cgtatcatgcaggatacagcacgtcggattgcacgagttagtcgtgaagcaaagatagag
attgacgaggaacaatatgtggagtcatttaaacctcatatgatggacattgttaacgcg
tggtgtaatggatccaccttcgcagagatctgtaaaatgtcagacatatttgaaggcagt
ataatccgttgtatgcgaagattggaggaaacactcagacagatgtgccaagcagccaaa
gctattggtaacacagaactggagaataaatttgctgaatctatacggagtataaagagg
gatatagtgtttgctgccagtctgtacttgtga
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