Pecten maximus (king scallop): 117329789
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Entry
117329789 CDS
T07399
Name
(RefSeq) DNA-binding protein SMUBP-2-like
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
pmax
Pecten maximus (king scallop)
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmax03009
]
117329789
03012 Translation factors [BR:
pmax03012
]
117329789
Enzymes [BR:
pmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117329789
5.6.2.5 RNA 5'-3' helicase
117329789
Ribosome biogenesis [BR:
pmax03009
]
Eukaryotic type
Other ribosome biogenesis factors
117329789
Translation factors [BR:
pmax03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117329789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
AAA_16
Viral_helicase1
nSTAND3
ResIII
AAA_22
SLFN-g3_helicase
Glyco_tranf_2_3
AAA
DEAD
Helicase_RecD
T2SSE
IstB_IS21
Flavi_DEAD
UvrD-helicase
UvrD_C_2
ABC_tran
RuvB_N
NTPase_1
cobW
ATPase_2
NPHP3_N
AAA_33
Znf_XAF1_N
Motif
Other DBs
NCBI-GeneID:
117329789
NCBI-ProteinID:
XP_033743821
LinkDB
All DBs
Position
6:40808527..40827295
Genome browser
AA seq
1003 aa
AA seq
DB search
MEKFISKHLRLLEKERETEVEETRALTEKLPIKELQRRGVCLPKLCIVGRRTGFYGRIVI
TFEMGRNQQELPSHNFTPGDIAGLSQSSGDQAEDMGSGIVTRASKTSVCVAFDDNQDLFL
LSDEGPYKLQKLANDVTYKRLKKALRDLQSLPPCPATQLVGVLFGERELTPPYIPKEITF
INQNLDDSQREAVRFALSQPEVAVIHGPPGTGKTTTVVEVITQAVKLGMKVLTCAPSNIA
VDNLVERLARNKLKIVRLGHPARVLPHIQKYSLDAILANSEETKLVEDVRKDLDKAWSQM
KRTRDKGEKHTLRGEMKFLRKELAQREQAATKEILKRADVVLATLTSASPEGPLKFLDEK
HFNLTVIDECSQAIEVACWIPLLRAPRCVLAGDHLQLPPTILSQEAAKDGLELTLMERII
DLYHTKVIRMLTTQYRMHQVIMQWSSDKLYHSKLTAHPTVAGHLLSDLEDVNAEEEEASL
PLLLIDTAGCDLPEMDTPEEISKGNEGEADIVSSHVDRLVTLGVKQQEIAVIAPYNLQVE
LLRLRIWPKFPDVEIKSVDGFQGREKEAVIITLVRSNRRGEVGFLSEKRRINVAVTRARR
HLAVICDSETVSHDEFLKSLVDYLSSHGEVQTAQDYIDSGVFSKSIRPEHLDDLLTLNSV
RRSKGSGARPKSSVSKSKQSHGSSDSKSSAASVVGPSKDRKHHEKHISDEAETEKKTEKY
REMLEKFVANTEVNCMEFPATLTSFERMLVHELAEKLSLTHISKGEDKERFIVVSKPGSQ
SVSMTTDTSVQPSLDEREETKSTGHLEEKSRQKEEKKSDKLVCPHCSKDVINANFSLHEI
HCLRKQKECSAKAAEKSQSTSSRKDSAKQQNGMKKVRPPSATAKIEKVDADDFDGLIAAA
QKLDEVCGFKKCKVKVKTLGQNCEFCMRRFCLSHHIPEIHGCGDVAKAQARSVHVKEGVL
YRSSMTKPPPPDPTRQAALHRKLDKKLSDLTSQRSKSGKKKKK
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagttcatcagtaagcatttgcgacttttggagaaggaaagggagacagaagta
gaagaaacaagggctttgactgagaaattgccaatcaaagagctacagagaagaggagta
tgccttcccaaactatgcattgtgggacgacggacaggattttatgggagaatcgtcatt
acatttgagatgggcaggaatcaacaggaactgccttcccataatttcactccaggagac
atcgctgggctgagtcagtcttcaggtgaccaagccgaggatatggggtcagggatagtt
actcgggccagtaaaacctctgtttgtgtagcttttgacgataaccaggatctctttctt
ctgagtgatgagggcccgtacaaactacagaaactagccaacgatgtgacatacaagcga
ttaaaaaaagccctccgtgacctgcagtcccttcctccttgtcctgccactcaacttgta
ggagtgctatttggggaaagggagttaacgccgccgtatatccctaaagaaattaccttc
ataaatcaaaatttggatgattcccaaagagaggctgtgagatttgctttgtctcaaccc
gaggtagctgtgattcacggccctccaggtacaggaaaaactacaacagttgtggaggtc
atcacacaggctgtcaaactcggcatgaaggtattgacgtgtgccccgtctaacattgct
gtagacaatctggtggaaagacttgcccgaaacaaactaaaaatcgtacgactcggccat
cctgcacgtgttctaccgcacattcagaaatactcacttgacgccattttagccaacagc
gaagaaacaaaattagtggaagatgtacgcaaggacctagataaggcctggtcacagatg
aagagaactagggacaaaggagagaagcacactttgcggggagaaatgaaattccttcgg
aaagaattagcgcaacgtgagcaggcggctacaaaagagatcttgaaacgagcagatgtt
gtcttggcaacactcacgtcggcctcgccagagggaccattaaaatttctggatgaaaaa
cactttaatttgactgttattgatgaatgttcccaggctattgaggttgcgtgttggatt
ccccttctgagggcccctcgatgtgtacttgctggagatcaccttcagttaccgccaacc
atcctcagtcaagaagcggccaaagatgggctggaactgaccctgatggagagaatcatt
gacctctaccacaccaaagtcatccgcatgctgaccacacaatacagaatgcaccaggtc
atcatgcaatggtcatctgacaaactctaccacagcaaactgaccgctcacccgacagtg
gctggtcatcttctcagtgacttggaggatgtgaacgcagaggaggaggaggccagctta
cccctactgttgatcgatacagctggctgtgatctgccagaaatggacacacctgaggaa
atatctaaagggaatgaaggagaggcagacattgtcagtagtcatgtagatagactggtt
accttaggagtgaaacaacaggagatagctgtcatagctccatataacctacaggtggaa
ctgttacgtcttcgaatctggccaaagtttccagatgtggaaataaagtcagttgacggc
tttcaaggacgtgagaaggaagcggtcatcattacacttgttcgaagtaacaggagaggt
gaagttggatttctgtccgagaaacgaagaataaacgtagcagtgacaagggcacggcgc
cacctggcggtgatttgtgacagtgagacagtgtcacatgacgagttcctgaagtccctt
gtagattacttgtccagtcatggagaggtgcagacagcccaggactacatagattctgga
gttttcagtaaaagcattcgtcctgagcatcttgatgatctcttgactctgaactctgtt
agaaggagtaaaggaagtggagccaggccaaaatcttctgtatcaaagtctaaacagagc
catggttcttctgatagtaagagcagtgctgcatctgtcgttggcccctcaaaggatcgg
aaacaccatgaaaaacatatcagtgatgaagcagaaacagagaaaaagacagaaaagtat
cgtgagatgctggaaaagtttgttgccaatacagaagtgaattgtatggaattccctgca
acactaacatctttcgagagaatgctggtacacgagctggctgagaagctgtctctaact
catataagtaagggagaagacaaggaaaggttcattgtggtctccaaacctggcagccag
tctgtatccatgacaaccgatacgtctgttcagccatctctagatgagcgagaagagacc
aaaagtacaggtcatttagaggaaaaatcaagacagaaagaggagaagaaaagtgacaag
ctggtttgcccacattgtagtaaagatgtcatcaatgcaaactttagcctacatgaaatc
cattgtttacgaaaacaaaaggaatgttcagcaaaagcggctgaaaaatctcaaagtact
tcttctcgtaaggactcggcaaagcagcagaatggcatgaaaaaggtacgtccaccaagt
gccactgcaaaaattgaaaaagtggatgctgatgattttgatggactgatagctgctgct
cagaaacttgatgaagtttgtggtttcaaaaaatgcaaagtgaaagtgaagaccctgggt
caaaactgtgagttttgtatgaggcgtttttgcctgtctcatcatattccggagattcat
ggttgtggagatgtagcaaaagctcaggcacgttccgtacatgtcaaggagggcgtattg
tatcgtagtagtatgacgaagcctccacctccggatccaacacgccaggctgccctccac
agaaaacttgataaaaaattgagcgacttgacttcacagcgttcaaagtcgggtaaaaag
aagaaaaaatga
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