Pecten maximus (king scallop): 117330469
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Entry
117330469 CDS
T07399
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pmax
Pecten maximus (king scallop)
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmax03016
]
117330469
Enzymes [BR:
pmax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
117330469
Transfer RNA biogenesis [BR:
pmax03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
117330469
Prokaryotic type
tRNA splicing ligases
117330469
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Kp4
Motif
Other DBs
NCBI-GeneID:
117330469
NCBI-ProteinID:
XP_033744654
LinkDB
All DBs
Position
7:complement(28404313..28416821)
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AA seq
506 aa
AA seq
DB search
MVVRTYQEELGYLEKIDANAWRIKKGFVPNMKVEGIFYANESLEKLMFDELKQSCRSQGY
GGFLPGMKQIGNVAALPGIIGKSIGLPDVHSGYGFAIGNMAAFDMGNPEAVVSPGGVGFD
INCGVRLLRTNLMEKDVQPVKEQLAQCIFDHIPVGVGSKGIIPMTAPNLEEALEMGMDWS
LREGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIYN
EAAAKKMGIECKGQVCMMIHCGSRGLGHQVATDALVAMEKAMKRDKIDVNDRQLACARIN
SQEGQDYLKGMAGAANYAWVNRSSMTFLSRQAFSKMFNSSPDDLDMHVIYDVSHNIAKVE
EHFVEGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
GETFGTTCHGAGRALSRAKSRRNLDYTEVLNALEEKGISIRVASPKLVMEEAPESYKNVT
DVVDTCHRAGISQKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtgagaacataccaagaggagcttggatatttggaaaagatagatgcgaatgca
tggcgtataaagaaaggctttgtacctaacatgaaggtggagggaatcttttacgcaaat
gaatcgctagaaaagcttatgtttgatgaattgaagcaatcttgtcgttcacaaggttat
gggggatttctaccaggaatgaaacagatcggcaatgttgccgctctacctggaatcata
gggaaatccataggtctccctgatgtacactctggttatgggtttgctataggtaatatg
gcagcatttgacatgggaaatcctgaagcagttgtctcccctggaggtgtaggttttgac
atcaactgtggggtccgactgctacggacaaacctgatggagaaggatgtccaaccagtc
aaggagcagcttgcccagtgtatctttgaccacattccagttggtgtgggctctaaaggc
attattcccatgacagcaccgaacttggaggaagctttagaaatgggaatggactggtca
ctgcgagaaggatatgcatgggctgaagacaaagaacattgtgaggagtatggacgcatg
ctacaggcagatccaaacaaagtcagcgctcgggccaagaaaagaggtctccctcagtta
ggaacacttggagctggaaatcattatgctgaaatacaagtagtagatgaaatttacaat
gaagccgcagccaagaaaatgggaatcgagtgcaaaggtcaagtctgtatgatgattcat
tgtggaagtcgaggacttggacatcaggtggccacagatgcacttgttgccatggagaag
gctatgaaacgagacaagatagatgtgaatgatcgacaactagcatgtgcaaggattaat
tcccaagaaggacaggattatttaaaaggaatggcgggagctgccaactatgcatgggtc
aatcgctctagcatgacattcctctccagacaggctttctctaaaatgttcaactcatct
cctgatgatctagacatgcatgtgatttatgatgtgtcacacaacattgccaaggtggag
gaacactttgtcgagggaaaacaaaggactctactggtgcacagaaagggttcaacacgg
gccttccctcctcatcacccactcattcctgttgactaccagttgacgggccagcctgta
ttgattgggggcaccatggggacgtgtagctatgtactgacaggtacagaacagggcatg
ggggagacttttggaacgacatgccacggtgcgggtcgagcattatcacgtgcgaagtcc
cgacgtaatctggattacacagaagttttaaacgctctggaggaaaaggggatcagcatc
cgagtggcttccccaaaacttgtcatggaagaggcaccagaatcttacaaaaatgttaca
gatgttgttgatacatgtcatcgtgcaggtatcagtcagaagtgtataaaactgcgtccc
atagcagtgattaaaggctga
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