KEGG   Pecten maximus (king scallop): 117332615
Entry
117332615         CDS       T07399                                 
Name
(RefSeq) THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
pmax  Pecten maximus (king scallop)
Pathway
pmax03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:pmax00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    117332615
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmax03019]
    117332615
   03041 Spliceosome [BR:pmax03041]
    117332615
Messenger RNA biogenesis [BR:pmax03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     117332615
Spliceosome [BR:pmax03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    117332615
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40 WD40_Prp19 WDR55 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd NBCH_WD40 WD40_MABP1-WDR62_2nd Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_Vps41 Beta-prop_RIG_2nd Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_IP5PC_F WDR54 Ge1_WD40 Beta-prop_SCAP WD40_RFWD3 PQQ Beta-prop_NOL10_N
Other DBs
NCBI-GeneID: 117332615
NCBI-ProteinID: XP_033747484
LinkDB
Position
8:complement(16885917..16899283)
AA seq 338 aa
MKEQDRSLAARRQYHTSVFAQCFSPCGKFLAAANNHGYIAVFSLSTALSPDSTEALWKPI
YSFKASEEGAIFCLASSDIFLISGGNGPICAWKWSDILNKSPKVIWSWSLPKRGPFYQTE
VNTIVIDKQETQCRLYAGCGDNNVYVWDMETGEQLVSLAGHDNYVHSVTLKNKGQMCATA
SEDGTVKIWDMRQPSSAQHTLEPYKNPLCTRPELGKWLGCVTMETGDDWLVCGGGPKMSL
WHLRSLEATTVFDTPAVSQKTVMFYEDTIISAGGEPYVNHWYVNGDQKARIPCTPTNVFS
IVVNTALNSHKVLCTAGNSPKIDVCTNFGYKAFSLTFS
NT seq 1017 nt   +upstreamnt  +downstreamnt
atgaaagagcaagatcggagcctcgccgcacgaaggcaataccacacatcagtttttgca
caatgtttttccccatgtgggaagtttctggctgcagcaaataaccatggatacattgca
gttttcagtctatcaacagctctatcaccagacagcacagaagctctttggaaacctatc
tactctttcaaagcatcagaggaaggagcaatattttgtctagcttcatcagacatcttc
ttaatcagtggtggaaatggaccaatttgtgcatggaagtggtcagacatactgaacaag
tccccaaaggtgatttggtcatggagtcttcctaaaagagggccgttttatcaaacagag
gtcaacaccattgtgatagacaaacaggaaacacagtgtcgtctgtatgcaggctgtggg
gataacaatgtatatgtatgggacatggagaccggcgaacagttggtcagtttggctgga
catgacaactacgttcacagtgtaaccctaaaaaataaaggccagatgtgtgccacagca
tctgaagatggcacagtcaaaatctgggatatgaggcagccatcttcagcacaacacaca
cttgaaccatacaaaaatccattatgtaccaggccagaattaggaaaatggttgggatgt
gtaactatggaaactggtgacgattggctggtatgtggaggtggtccaaagatgtccctg
tggcacctgcgatcactagaggccaccacggtgtttgataccccagctgttagtcagaag
acagtcatgttctatgaggacacgataatttcagcgggaggtgagccatatgtaaatcat
tggtatgtaaatggtgaccagaaggcacggataccttgtaccccaactaatgtgttcagc
attgttgtcaacaccgccctcaacagtcataaggtgctttgcactgccgggaacagtccc
aagattgacgtctgcacaaacttcggatataaggcattctcattgacattcagctga

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