Pecten maximus (king scallop): 117332984
Help
Entry
117332984 CDS
T07399
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pmax
Pecten maximus (king scallop)
Pathway
pmax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117332984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmax03041
]
117332984
Enzymes [BR:
pmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117332984
Spliceosome [BR:
pmax03041
]
Complex C
Other components
Step II factors
117332984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_DEAH11
Helicase_C
IBR
RRM_1
OB_NTP_bind
DEAD
KH_DEAH11_2nd
IBR_1
AAA_22
IBR_2
ResIII
AAA_19
zf_CopZ
RRM_Nup35
Helicase_RecD
nSTAND3
ATPase
ABC_tran
AAA_30
AAA_29
Motif
Other DBs
NCBI-GeneID:
117332984
NCBI-ProteinID:
XP_033747970
LinkDB
All DBs
Position
8:complement(25807700..25827607)
Genome browser
AA seq
1787 aa
AA seq
DB search
MSDQRHNLPRVVGPLHGRGSIRMVPTQVLRRSTGRQLATESNHSKKAYRDQKESDQEYNK
EMNEENVPSSGQVHPRTVRYNERGRTNQTSSYQEKLQETTSNQSRRVKESGTIPFNRGIQ
AKQSKTKTLFVKFGETIQEHIDIFSYLLQRLPNGMKFTYLEQTTDEVTGNTIVVLQCPSR
YDAEHLEEELEKSNDECDTKICCFNSFEEAHGLPMSTKEKNHIFLEKCTKDIMTRTELSL
AAHEAKIEELTEKIMRLQQSKPKFLSLEDFAIIDQEQKAIEDKLKELQRQKVEFQNFIAS
VHLKFIEIQDSPTCQKPAIEIMKAFGVECNRLDKALPMYARRSDILDIVKNNQVSVIIGE
TGSGKSTQMAQYLYQSGHANNGMIACTQPRKIAAISVATHVASEMGTSVGDIIGYKVGMQ
EKKTSFTKVLFMTDHALLKECLRDRNLSSFSCIIIDEAHERSIYTDLLLGMIKSCLDVRT
DLRVVVTSATIDPEVFVQYFGKCPVLSVSGRMFPVEVIWREPDSDQESFSNYIDECVKKA
MDVHYNQPEGDILVFVTSPQETEICCEKFMNFTEERDGNFVCLQLHGKLQAEEQRKVFDT
IIGKRKIVFATNSAETSVTIPGIRYVIDTGLAKEMSYDPKRKMNTLAVTTVAQSSANQRK
GRAGRLGPGVCFRLYTEDEYDTMKANMVPEILRVNLGQAMLKLMELDIDPLEFDFVMSPS
KENMESAVSELENLGAVSARRITDLGKWISKLPFDPKFGVFIHNTLSIGTGLEGIVISAA
CSGGPVFFRAGTTDEKEQADRKKMKFCHENGDLMTMLNVFREWSRQPEKARGPWCFDQSI
NGKAMKGIKEVAKEVLLTLKRELQTEVQFRFDDPDNVDHKLIKPLLKIFRGNISHYLGHP
KAGYVLVTKDQRVEVHPSSSLISLGNQPEWLVFDQVMKTSRDFAMNITPVSKEMVLDGIE
EGLLDLDIKEARRKRVIPIVTSYVGSKVFREVVGPRYATLRTFEEALVEKCLGSIVVVEA
DREIGELKIFSQIANQETLEGSLDNVLKPIKDNFLCEEREEKLGVKSTDRSVRAILRAGG
CTKSLLMPDEYKVVMIHCAINKTQELEYDDVFQHFSKFGTIAKCSKYHFKKNAPSLWGQV
VYQKTEDAVRAVSDTRGNPDLSARPSIRLISEQSDKFKVRIQWCRRRSRGFGFITFSSML
DADNAIRKGHILVGNSVAKVKPSKTKAANLTTEGQIHVAGLSQMVNEDVLRESFAKSLDL
DPVTSITRVTVIREKVSSESEDILNIIKRRLRAEIENYVDQNSYALELRPIQRETEINFT
AFVTFDKPEDGQIVCEKMDHKFVLNDQTVSAKAVLHCSLYIPKRIYEKSSDAVSLCVREL
ETEGVRMKTKTLRNENVVIEINTDDVETLVRARRSFQDIIKGEVIECDESVELKSLFTWE
GRNKLKHIMHQTETFILADNRVMSVSIHGLQQNRQRAKQKIDEFLLEISSDTSEIVILKG
EGKPPGVLKALLLKYTSDFSKLCQETGLVSVRLDQRNHRLMLFGSESTVNAAKTLIREVM
GSLSPIGVKVEEDDPECITCFCPMERKDLYRIECCGHPYCKECLQLQVQTSITHREFPLK
CEMEDCNTLFTWQDITSLSKMGYIKISELTDSSVGKFVQENKKKYRFCITPDCSVVYRIT
EIGKLFSCPECNIRLCTSCHVQFHDGITCAMFKAEGNEDQTMRSWFSENRANRKRCPNCA
MPIEKNGGCNHMTCLSCKKHICWLCLDFFDECGACYGHLGKAHGSFV
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatcagcgacataatttaccaagagttgtgggtccattacatggtagaggatct
attagaatggtaccaacacaagtgttacgaaggagcacagggagacaactggctacagaa
tccaaccattctaaaaaagcatatagagatcagaaagaatctgaccaggaatataacaaa
gaaatgaatgaggaaaacgttccttcatctggacaagttcatcctcgtactgtacgatat
aatgaaagaggacggacgaaccagacttcctcctatcaagagaaactacaagagactaca
agcaatcaaagcaggcgagtaaaagaatcaggaactataccatttaatagaggtattcaa
gccaaacaatccaaaaccaaaacactgtttgtgaaatttggagagacaatacaggaacat
attgacatatttagctatcttttacagaggctaccaaatggcatgaaattcacttactta
gaacaaactactgatgaagttactgggaacacaattgttgttttgcagtgtccaagtaga
tatgatgctgaacaccttgaggaggaactggaaaaaagtaatgatgaatgcgacacaaaa
atctgctgctttaattcgtttgaagaagcacatggtctgccaatgtcaactaaagagaaa
aatcacatatttcttgaaaaatgcacaaaagatataatgacaaggacagagttgtctttg
gcagcacatgaagccaagatagaagagttgacagagaagataatgcgacttcagcagtcg
aaaccaaaatttttgtcgttggaagatttcgccataattgaccaagaacagaaagcaatt
gaagataaactgaaagagctacaacgtcaaaaagttgaatttcaaaattttattgcatca
gttcatctcaaattcattgaaatacaagactctcctacttgtcagaaaccagctattgaa
atcatgaaagcatttggcgtggaatgtaacagacttgataaagccttaccgatgtacgca
agaaggtcggatatccttgatattgtgaagaacaatcaggtgtcggtgatcattggggaa
actggatccggaaagagcacacagatggcccagtatctctatcaaagcggccatgcaaac
aacgggatgatcgcctgtactcaaccacgcaaaatcgccgccatcagtgttgctacacat
gtagcaagcgaaatgggcacatctgtaggagacattattggatataaggttggaatgcaa
gaaaagaaaacatcatttacaaaagttttgtttatgacagatcatgctctattgaaagaa
tgtcttcgggatagaaatttatcttcattttcttgtatcatcattgacgaagcacacgag
cgaagtatatacactgatctgctactcggtatgatcaaaagctgccttgacgtgcgtacc
gaccttcgtgttgtggtcacatctgctacgattgaccctgaggtctttgtccaatatttt
ggtaaatgcccagtactgtccgtgtctggaaggatgtttcccgtagaggtcatatggaga
gagcccgattctgatcaggaatcgttctcaaactacatagatgaatgtgtcaagaaagct
atggatgttcattacaaccaacctgaaggagatatccttgtgtttgttacctctccacaa
gagacggaaatatgttgtgagaagtttatgaatttcacggaagaaagagatggaaatttt
gtttgtctacagctgcacgggaaacttcaagctgaagaacagagaaaagtgtttgatact
attattggtaaacgcaaaatcgtgtttgctactaacagtgctgagacctcagttactatc
ccaggcattcggtatgttattgacactggcttggctaaggagatgagttatgatccgaaa
cggaagatgaacacattggccgtaacaacagtggcacaaagctcagctaatcagcgaaaa
ggtcgtgcgggacgacttggacctggggtatgctttcgactatatacagaggatgaatat
gatacaatgaaagcgaacatggttccagagatactacgagtgaatcttggccaggcaatg
ttgaaacttatggaacttgatattgatcctttggagttcgattttgtcatgtcaccatct
aaagaaaatatggaaagtgcagtaagcgagttggaaaatcttggagctgtatctgcaaga
agaataaccgatcttggcaaatggatttcaaagttgccttttgatccgaagttcggagtt
ttcatccataatacactgtctattggcactggtctcgaggggatagttatatctgcggct
tgtagcggtggtcctgtcttcttcagagctggaacaactgacgaaaaagagcaagccgat
cgaaaaaagatgaagttttgccacgaaaacggagacttaatgactatgttgaacgtgttt
agagaatggtcccgtcagcctgaaaaagccagagggccgtggtgttttgatcagtcaatt
aacggcaaagcgatgaaaggaatcaaagaagttgccaaagaagttctattaacgctgaaa
agagaactgcaaacagaagtacaatttcgatttgatgacccagacaatgtagaccacaag
cttatcaagcctcttctaaagatatttcgtggaaatatcagccactatcttggtcatcca
aaggcagggtatgttctcgttacaaaggaccagagagtagaagttcatccatcatcatct
ttgatatctttgggaaaccagccggagtggcttgtctttgatcaggtgatgaagacatca
agggactttgcaatgaatataacaccagttagcaaagaaatggtgttagacggcattgaa
gagggattactggatctggatattaaagaagccagaagaaaacgagttatacccattgtt
acatcatatgtgggatcaaaagtttttagggaagttgtaggacctcgatatgcaactctc
cgaactttcgaggaagcgttggttgaaaaatgtctcggatcaatcgttgtggttgaagct
gaccgcgaaatcggcgaactgaagatattctctcaaattgcaaatcaagaaacgttagaa
ggttctttagataacgtgcttaagcctatcaaagataattttctttgtgaggaaagggag
gaaaaacttggtgttaagtcgactgaccgatctgtaagagctatcctaagagcagggggc
tgtaccaagtcattgttgatgccagatgagtacaaggtcgtgatgatacactgtgctata
aataaaacacaagaattggaatatgatgacgtatttcaacatttcagcaagttcggaaca
attgcaaaatgtagtaaataccattttaagaagaatgcaccatctctttggggtcaagtg
gtttatcagaaaactgaggatgctgtacgagcagtttctgatacaagaggaaatcctgat
ctctccgctcgtccaagcattagattgataagtgaacaatctgataaattcaaagtacgc
atacagtggtgtcgcagacgttcacgggggtttggattcatcacatttagtagcatgcta
gatgccgacaatgccattcggaaaggtcacattttggttggtaattcagtggccaaggtc
aaaccatcaaaaacaaaagcagccaacctaaccacagaaggacagatccatgtagctgga
ctaagccaaatggttaatgaggatgtgttgagggaaagctttgccaaaagtttggatttg
gatccagtcaccagtataacaagagttactgtcatcagggaaaaggtcagcagtgaaagt
gaagacattcttaacataataaaacgacgacttcgtgcagaaatcgaaaactatgtcgat
caaaattcctacgcgttagagctgagaccaatccaacgagaaactgagatcaacttcact
gcatttgttacgtttgataagcccgaagatggccaaatagtatgtgaaaaaatggaccac
aaatttgtattgaatgatcagactgtgtcagccaaggctgttctacattgttctttgtac
atcccgaagagaatatacgaaaagagcagcgatgctgtaagtctgtgcgtcagagagctg
gaaacagagggagttcgaatgaaaacgaaaacactccgaaatgagaacgttgttattgaa
ataaacacagatgatgttgaaaccctcgtcagagcaaggcgatctttccaagacatcata
aaaggagaagtaatcgaatgtgacgagtcagttgagttgaagtcgttattcacatgggaa
ggccgaaacaagttgaagcatatcatgcatcaaacagaaacgttcatccttgcagacaat
agggtgatgtctgtctccatccacgggctccaacaaaatcgacaaagagcgaaacagaaa
atcgatgagtttctgttggaaatatcctctgacacctccgaaatcgtgattttaaaaggc
gagggaaagccaccaggagttttgaaggcacttttgttgaaatacacatccgatttctcc
aaactgtgtcaagaaactggtcttgtttctgttcgattggatcaaagaaatcatcggttg
atgttgttcggatcagaaagcactgtcaatgcagcaaaaacactcattagggaagtgatg
gggagtttaagtcctattggtgttaaagtagaagaagatgatccggaatgtatcacatgc
ttttgtcctatggagcgaaaagatttgtaccgtatagaatgttgtggtcacccttactgc
aaggaatgtctccagctccaagttcaaacgtccatcacacacagggaatttccgctgaaa
tgtgaaatggaagactgcaacactctatttacgtggcaagatatcaccagtctttcgaaa
atgggttacatcaaaatctccgaactaaccgattcgtcagtaggtaaatttgtccaagaa
aacaaaaagaaatatcgtttttgcataacgcctgactgttctgttgtgtaccgaattaca
gagattggaaagctgttttcttgtccagaatgcaacataagattatgtacaagctgtcat
gtacagtttcatgatggtatcacatgtgccatgttcaaagcagagggaaacgaagatcaa
actatgagaagctggttctctgagaacagagctaaccgaaaaagatgtccaaactgtgct
atgcctatagaaaagaacggcggatgcaaccatatgacgtgtttgtcatgtaaaaaacat
atttgttggctgtgtctggatttctttgacgagtgtggcgcatgttacggccatcttggt
aaagctcatggtagctttgtttga
DBGET
integrated database retrieval system
