Pecten maximus (king scallop): 117333432
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Entry
117333432 CDS
T07399
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
pmax
Pecten maximus (king scallop)
Pathway
pmax03040
Spliceosome
pmax04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117333432
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117333432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmax03041
]
117333432
04121 Ubiquitin system [BR:
pmax04121
]
117333432
03400 DNA repair and recombination proteins [BR:
pmax03400
]
117333432
Enzymes [BR:
pmax01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117333432
Spliceosome [BR:
pmax03041
]
Complex B
Other components
Prp19 complex
117333432
Complex C
Prp19-CDC5 complex
117333432
Ubiquitin system [BR:
pmax04121
]
Ubiquitin ligases (E3)
U-box type E3
117333432
DNA repair and recombination proteins [BR:
pmax03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
117333432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WDR55
Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
Beta-prop_SCAP
NBCH_WD40
Beta-prop_EIPR1
U-box
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_HPS5
PEP5_VPS11_N
WDR90_beta-prop_4th
eIF2A
zf-Nse
Beta-prop_IFT122_1st
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
Nucleoporin_N
RMC1_N
ATG16
Cytochrom_D1
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
117333432
NCBI-ProteinID:
XP_033748615
LinkDB
All DBs
Position
8:complement(38345247..38358186)
Genome browser
AA seq
509 aa
AA seq
DB search
MALCCAISNEVPEQPVISSASGHIYEKRLIEKYIKENGTDPMNGEKLSTEMLMEVKASPL
VKPRPASATSIPAILKSLQDEWDAVMLHSFTLRQQLQTARQELSHALYQHDAACRVIARL
TKEVSAAREALATLKPQAGVAAPGYTAPPQQPAYGAEANPEAAQQPMEEAGMSDEVLQKL
QDKATLLTAERKKRGKTVPEGLAIVEDIKTYRQLASHTGLHSASVPGILSLDVCLKDTSK
IVTGGNDKNAVVFNKDTEQVMAILKGHSKKVTSVIYHPEEELVFTASPDCTIRVWGVQTA
QCAQIIRAHDAPVTGISLHATGDYLLSSSTDMHWAFSDLRVGRVLTKVNDPSSQHALTCA
QFHPDGLIFGTGTEDSMIKIWDLKERANVANFPGHQGPITSIAFSENGYYLATSAEDSVV
KLWDLRKLKNFKTLQLSDKYDVRSLSFDQSGTYLAVAGTDVRVYLCKQWQDLVVFNDHTA
TATGVRFGHNGTFLASASMDRSLKFFGIP
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtgctgtgcaatcagtaatgaggttccagaacagccggtcatttcttcagcc
tccggccacatctacgaaaagcggctgatagaaaaatatatcaaagaaaatggaacagat
cccatgaatggcgaaaaactgtcaacagaaatgctgatggaagtcaaagcatcgccactg
gtgaagccaagaccagcatcagctacaagtattccagcaattttaaaatctctacaagat
gaatgggatgcagtcatgttacacagttttacactgagacaacagcttcagacagccaga
caggaattgtctcacgccctgtaccagcacgatgctgcctgtcgtgtcattgcccgtctc
actaaggaagtctctgctgccagagaagccttggccaccctcaaaccccaggcaggcgtg
gctgctccaggatacactgctcctcctcaacaaccggcatatggagcagaagccaatcca
gaggctgcccaacagccaatggaggaggccggcatgagtgatgaagtcctacagaagctc
caagacaaagctactcttcttacagcagaacgtaaaaagagaggcaagactgtccctgaa
ggtttggccattgttgaagacattaagacttacagacagttggcttctcacacgggatta
cacagtgccagtgtgcctggaattttatctcttgatgtgtgtctgaaggatacttctaag
attgttaccggtggaaatgacaaaaatgctgtggtatttaacaaggacacagaacaggtc
atggccattctcaaaggtcattcaaagaaggtcactagcgtcatttatcacccagaagag
gagttggtgttcactgcttcgcctgattgtaccattcgtgtgtggggtgtccagactgca
cagtgtgcccagatcattcgtgcccacgacgcccctgtcacaggcatcagtctccacgct
actggtgactaccttctcagctcatctacagacatgcactgggcattttcagatcttcgt
gttggcagagttctgactaaagtcaatgatccatcttctcaacatgccctgacctgcgca
cagtttcatcctgatggtttgatctttggtactggcacagaagactcaatgatcaagatc
tgggatctgaaggagagggctaatgtggccaacttccctggtcaccagggccccattact
agtattgctttctctgaaaatggttactacttggctacatctgcagaagattcggttgtc
aaactttgggatttgagaaaattgaagaacttcaagaccttacaactaagcgacaaatat
gatgtgaggtcgctgtcctttgaccagagtggtacctaccttgctgttgcgggtactgat
gtcagagtttacctgtgcaaacagtggcaagatctggtggtgttcaatgaccacactgca
acagcaaccggtgttcgattcggtcacaacgggaccttcttggcatcagccagtatggat
cgttctctcaagttctttggtataccatga
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