Pecten maximus (king scallop): 117334657
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Entry
117334657 CDS
T07399
Name
(RefSeq) LOW QUALITY PROTEIN: 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pmax
Pecten maximus (king scallop)
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmax03041
]
117334657
Enzymes [BR:
pmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117334657
Spliceosome [BR:
pmax03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117334657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
HA2_N
Ank_2
nSTAND3
AAA_19
Ank
NPHP3_N
AAA_22
Ank_5
AAA_23
T2SSE
ATPase
TsaE
Ank_4
Motif
Other DBs
NCBI-GeneID:
117334657
NCBI-ProteinID:
XP_033750300
LinkDB
All DBs
Position
9:42558171..42600356
Genome browser
AA seq
1552 aa
AA seq
DB search
MAANWKYGRSEPPPGGSFARVMQRGDGASPRPSSTNSSQSFHSFASSEDYQDHGPRPGQD
ICIGEEVKIAIHLAMERFRMNESQKELEFPSSLTATERAYVHKLCEGNGLKSRSKGKGSG
RFLTVTKKEGCLSSQSSASFYLARNSRQQILNLLQRYPVSNKERQELIPRVDRNQPNDVG
KELNKTTIGKLNNGVAQVPPPRSDSDLNAFREGLPVFKHRQNILDTLNNNRVILISGETG
SGKTTQVPQMILDDCCNKKLPCRIFCTQPRRIAALSIAERVALERGEKIGQTVGYQIRLE
SKVSPKTLLTFCTNGVLLRTLMNGDASFGGVTHIIVDEVHERDRFSDFLLASMDDLMTKH
SHLKVILMSAALNTQLFVQFFNNCPVVHIPGTLFTVKEYYLEDILKWTNYSNKAMEKAQR
EKTKVTRQQEQLEEWCAKMSIGSSEKEEESDTGKASQANTETTQKNANEDKEELQDWIVK
EMDQYLTDIFLIGSEDKFTQMVHLIMSENVSVDYQHSETGVTPLMVTTARGLSEEVEQLL
NLGANVNLHTPNGWTAIDWAKRFQRVDILEMLEALMLSNDVGPSGDSVIEADNRLLTDAE
KDLLSLYQNCFDDEKVDIQLILNLIYQLMINYSEGAILVFLPGYDDIVGLRDLIADDTFF
HKYKYLVFTLHSAMQSNDQRRVFKTPPPGVRKIILATNIAETSITIDDVVFVIDSGKVKE
KTFDALLSVTMLKSNWISKASALQRKGRSGRLRPGHCYHLFSKVRYSNLMDFPAPEILRY
PLQELCLHTKLLAPKTCSIADFLSKCPEPPTFLLTRNAIHLLKQIDALDSCEDLTELGHH
LSDLPVEPCLGKMVLYSVVLKCLDPVLTIVCTLAYKDPFVLPNQPNLKREASMSRRKFAA
DTFSDHMALLRAFQAWQRARTDGWEKSFCDKNYLSSACMEMIVGMRTQLLGQLRASGFVR
ARGGGDIRDLNTNSENWAVVKAALCAGSYPNLLRVDRQKAKLTTQKESNVFFHMSSVVSQ
IPSSKKTQKSQFIKSLRSDWLFYQEMTRFQRHPMVRTCTMVSPITVAVFAGPAKLSPDSV
KDRHLNRNLGIRGEFGSEESDSEGEGKEDDRKTTLQLDEWLGFKLDNETMSIVLQLRQKW
NSLLLRRMKSPSKTWSQLDESVVRTIVNVLTNEEQTMGLQQPAGIGQRPRPMTAESIMSG
GSGKGNFDFVTPPRKNFQFQQRASTSGVETTSSSSSNSPSTNTSLRGSQSSTPSMSPGPA
SPGGNHGLSVSFFVMKCNSQKQLDMSMNKGVWTTNASNNKKLNSLFQEGKAVYLIFSIHG
SGHFQGYAKMKSEFVYKKAQDSSHHGSDYCCDIEWIKRANLPFQSTHQLLNPWDDNRKVQ
SSKDGQEIAPHVGEALVKLWDKYSGPQGKSSPLVGNKPQYAGKRGGFHSTASPEGHGSYQ
SAGNDPGEYSTHSHRNFYNRGYQDHSNYGGYHVNEGSHKGQRGQGQRGKSPMNQGLHFDN
YSGYHTGGYQDNGAPPRTDYGPFNYHQRGQGSGGHQHGGHRRGNHNRSGNKR
NT seq
4659 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaactggaaatacggcagaagtgagcctcctccagggggttcctttgccagg
gtgatgcagagaggcgatggagcttcccctcggccttccagtaccaatagttcccagagt
ttccatagctttgcctccagtgaggactaccaggatcatggaccccggcctggccaggat
atctgtatcggggaggaagtcaagatagctattcatttggctatggagcgttttcgtatg
aatgaaagtcaaaaggaacttgagtttccatcatcactgacagctacagagagagcctac
gtacacaagttatgtgaagggaatggattgaagtcgaggagtaaaggcaagggcagtgga
agatttcttactgttactaaaaaagaaggctgtttgtcttcccagtcgtctgcctcattc
tacctagcaagaaatagccgtcaacaaattctgaatctcctacaaagataccctgtctcc
aataaggaacgccaggaattgataccaagagtcgatagaaatcaacccaatgatgttggt
aaagaactgaacaaaacaactattggtaaactcaataatggagttgcccaggtgccccca
cctcgaagtgactctgatctgaatgcttttcgtgaaggattgcctgtcttcaaacacaga
cagaatatccttgataccctcaataataaccgagttattttgatatctggtgaaactgga
tcaggaaagactacacaggttcctcagatgatactggatgactgttgcaacaagaagcta
ccttgtaggatattctgtacacagcccagaagaatagctgctctcagcattgctgaaagg
gtggctttagagaggggagagaaaattggtcagactgttgggtatcaaatacgactggag
agcaaggtgtctcctaaaactttgcttacattttgtacaaatggtgttctcctccgtact
ttgatgaatggggatgcctcctttggtggtgttacacatataattgtggatgaagttcat
gaaagagaccggttcagtgatttcttactggcatccatggacgatctgatgacgaaacat
tctcatctgaaagtaatccttatgagtgctgcactgaacacacagctgtttgttcagttt
ttcaataactgtcctgtagttcatatacctggcacactttttactgtgaaggaatattac
ttagaagatatattgaagtggacaaattacagcaacaaagcaatggaaaaagcacaaaga
gagaagacaaaggtgacaagacagcaagagcagttagaggaatggtgtgctaagatgagt
attggaagttcagagaaggaagaggaatctgacactggtaaagcgagccaagccaacact
gaaacaacacaaaaaaacgcgaatgaagataaagaagagctccaagactggatagttaag
gaaatggatcagtatctcactgatattttcctgatcggaagtgaagacaaatttacccag
atggttcatctcattatgagtgagaatgtcagtgtggactaccagcattctgagacaggt
gtcacacctctaatggtgactactgccaggggtctgtccgaagaagtagaacagctgctt
aatcttggagctaatgttaatctccacacaccaaatggctggactgccattgactgggcc
aagcgctttcagagagtagacattttagaaatgttagaagctctaatgctgtcgaatgac
gttggaccttctggagactctgtgatagaagctgataaccggttattgacagatgcagag
aaggatcttttgtcactgtatcagaactgctttgacgacgagaaagtggatatccagctc
atcctcaatctcatttaccagcttatgattaactacagtgaaggtgctattttggtcttc
ctaccagggtatgatgatattgttggtctaagggatttgattgcagatgacacctttttc
cacaagtataaatacttagttttcactctacattctgccatgcagtcaaatgatcagagg
agagtgtttaaaacaccaccaccaggagtacgaaaaatcatcctggccaccaatattgct
gagactagtatcaccattgatgatgttgtgtttgtcattgattctgggaaggtcaaagag
aaaacttttgatgctttattgtctgtcaccatgttgaagagtaactggatatcaaaagcc
agtgccctgcagagaaagggcagatcagggaggctgagaccaggccattgttatcacctg
ttcagtaaagtgagatactcaaacctgatggactttccagctccagagatacttcgatac
cctctccaggaattgtgcctacataccaagctgcttgctcccaaaacctgctccattgct
gatttcttgtcaaagtgcccggagccccctaccttccttctcaccaggaatgctatacat
ctcctcaagcaaatagatgccctggattcatgtgaggacttgacagagctaggacatcac
ttgtcagatcttcctgtggagccatgcctgggaaagatggtgctgtactcagttgtcctc
aagtgtttggaccctgtactcaccattgtgtgtacattagcctacaaagatccatttgta
ttgcccaatcagcccaacttgaagagggaagcaagtatgtctcgacgtaaatttgctgct
gatacgtttagtgatcatatggctttactgagagctttccaggcatggcagcgagccaga
accgacggttgggagaaaagcttctgtgataagaattacctgtcctcggcctgtatggag
atgattgttggaatgagaacacagctgcttggtcagttgcgggcatcaggatttgtacga
gcacgaggtggaggagacatcagagatctcaacactaactcggagaactgggctgtcgtg
aaagctgccctgtgtgctggcagctacccaaatctgctccgagtagaccggcaaaaagcc
aaacttaccacccagaaagaaagtaatgtgttcttccacatgagctctgtggtaagtcag
attccaagctcaaagaagacccagaagagccagtttattaaaagcctgcgctctgactgg
ttattctatcaggaaatgacccggttccagcgtcaccctatggtaaggacctgtactatg
gtgtccccaatcactgtggcagtgttcgccggaccagccaagctatcaccagactccgtc
aaggacaggcatttgaacagaaatttggggatcagaggagagtttggcagtgaggaaagt
gatagtgaaggtgagggcaaagaagatgacaggaaaaccacactacagttggatgaatgg
cttggcttcaaactcgacaacgagacgatgagcattgtgttacaactgagacagaagtgg
aacagcctgcttttacgaagaatgaagtcaccttccaagacatggtcacaacttgatgag
tctgtggttagaacaattgtcaatgttttaaccaatgaggagcagacaatgggactacag
cagcccgctggaattggtcagcgacccagacctatgactgctgagtcaatcatgtcagga
ggcagtgggaaaggcaactttgactttgttacacccccacggaagaattttcagtttcag
caaagagccagcacgagtggagttgagacaacatcatccagtagtagtaattctccgtcg
accaataccagtctgaggggtagtcagtccagtacaccctccatgagtcccggtccagct
tccccaggtggtaaccatggtctatcggtcagcttctttgttatgaaatgtaacagccaa
aaacaactggacatgtccatgaacaaaggagtatggaccactaatgcatccaacaataag
aaactcaacagtctgtttcaggaaggaaaagcagtttatctgatattctccatacatgga
agtggccatttccagggttacgccaagatgaaatcagagtttgtatacaagaaggctcag
gactctagtcatcatgggtctgactactgctgtgatattgagtggatcaaaagagcaaac
ttgccattccaaagtacccaccagttactgaacccctgggatgacaacagaaaagtacag
agcagtaaggatggccaggagattgcaccacatgtcggagaagccctggtcaaattgtgg
gacaaatactcaggtcctcagggaaaatcttcccccttggtgggtaataagccacaatat
gctgggaagagaggtggtttccacagcacagcctcacctgaaggacatggcagctaccag
tctgcagggaatgatcccggtgaatactcaactcacagtcaccgtaacttctacaacaga
ggataccaggatcactcaaactatggaggatatcacgtcaacgaagggtcacataaaggt
caaagaggtcaaggtcaaagggggaagtcaccgatgaatcagggacttcactttgataac
tatagtggctaccacactggtggataccaggacaatggggcaccacccagaactgattac
ggaccattcaattatcaccagaggggtcaagggtcaggaggtcatcagcatggaggtcac
aggagaggaaatcacaacagatctgggaataagagatag
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integrated database retrieval system
