Pecten maximus (king scallop): 117340975
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Entry
117340975 CDS
T07399
Name
(RefSeq) ATP-dependent RNA helicase cgh-1-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pmax
Pecten maximus (king scallop)
Pathway
pmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117340975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmax03019
]
117340975
03036 Chromosome and associated proteins [BR:
pmax03036
]
117340975
Enzymes [BR:
pmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117340975
Messenger RNA biogenesis [BR:
pmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117340975
mRNA degradation factors
5'-3' decay
Decapping complex
117340975
Chromosome and associated proteins [BR:
pmax03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117340975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
117340975
NCBI-ProteinID:
XP_033758654
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All DBs
Position
13:34294723..34314419
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AA seq
455 aa
AA seq
DB search
MATAKVDQNSSNHHSIPMDGMKSGNSDGNSDQGWKSKLNLPPKDTRLKTTDVTNTKGNEF
EDFCLKRELLMGIFEKGWEQPSPIQEASIPIALTGRDILARAKNGTGKTGAYTIPIIERC
DPTRNEVQALVIVPTRELALQTSQICIEISKHIGCKVMVTTGGTNLKDDIMRLYEPVHII
IATPGRILDLMNKRLVKIGKCGMLVLDEADKLLSQDFKGMLDNIISHLPNNRQILLYSAT
FPLSVEQFMRKHLDSPYEINLMDELTLKGVTQYYAFVQEKQKVHCLNTLFSKLQINQSII
FCNSTNRVELLAKKITELGYSCFYIHAKMNQQHRNRVFHDFRQGLCRNLVCSDLFTRGID
IQAVNVVINFDFPKHSETYLHRIGRSGRYGHLGVAINLITYDDRFSLHRIESELGTEIKP
IPKNIDKSLYVAEFHQERDDDDDVPRNSNGAKGGQ
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgccaaagttgatcaaaactcgagtaatcatcactccattccaatggatggt
atgaagtctggcaacagtgatggtaatagtgaccaaggatggaagagtaaattgaatctt
ccacctaaagatacccgtttaaagacaacagatgttacaaacactaaaggaaacgagttc
gaggacttttgtctcaagagagaactccttatgggtatttttgaaaaaggctgggaacaa
ccatcacccattcaggaggctagcatccctattgcccttacagggcgtgatattttagct
cgagctaagaatggtactggaaagactggagcctatactatcccaatcatagagagatgt
gaccccactcgcaacgaggtacaagcccttgtaatagtacccacccgagagttggctcta
cagaccagtcagatatgtattgaaataagtaaacacataggatgtaaagtgatggtcaca
acaggaggcacaaacctaaaggacgacattatgagattatatgaaccagttcacattatc
atagccacaccaggcagaattctagacttgatgaacaaacgattagtaaagattggaaag
tgtggcatgctggttctggatgaggcggacaaactgctgtctcaggattttaaggggatg
ttggacaatataatcagccatctacccaacaatagacagatactcctgtactctgctacc
tttcccctcagcgttgagcagtttatgaggaagcaccttgacagtccctatgaaatcaat
ttgatggatgagctgacattgaagggagttacacagtattatgcttttgtccaggagaaa
cagaaggtccactgtctcaacacattgttctcaaagttacaaatcaaccagtctattatc
ttttgtaactccacaaatcgtgtagaacttcttgccaaaaagatcacagaacttggttac
tcctgtttctacatccatgctaagatgaaccagcagcacagaaaccgagtgtttcacgac
ttcagacaaggactctgtaggaatcttgtatgttcagatttgttcacgaggggaattgac
atccaggcggtgaacgttgtcattaactttgacttccccaagcattcagaaacatacctc
cacaggatcggtagatctggtcgatacggccaccttggagtcgccatcaacctcatcact
tacgatgacaggttttcgttacacagaattgagagtgagctgggcacagagatcaaacca
atcccaaagaatatagacaaatccttgtatgtggccgagttccaccaggaaagggacgac
gacgatgacgtcccacggaactcgaacggggctaaaggcgggcagtga
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