Pecten maximus (king scallop): 117341686
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Entry
117341686 CDS
T07399
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pmax
Pecten maximus (king scallop)
Pathway
pmax03020
RNA polymerase
pmax03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117341686
09124 Replication and repair
03420 Nucleotide excision repair
117341686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmax03021
]
117341686
03400 DNA repair and recombination proteins [BR:
pmax03400
]
117341686
Enzymes [BR:
pmax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117341686
Transcription machinery [BR:
pmax03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117341686
DNA repair and recombination proteins [BR:
pmax03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117341686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
SelB-wing_1
Motif
Other DBs
NCBI-GeneID:
117341686
NCBI-ProteinID:
XP_033759438
LinkDB
All DBs
Position
14:complement(16483151..16502198)
Genome browser
AA seq
1950 aa
AA seq
DB search
MAYTGDSNATMRDVKKVQFGILSPDECRRMSVTDGGIRYSETMEGGRPKLNGLMDPRQGT
IDRTSRCQTCAGNMAECPGHFGHIELSKPVFHVGFFTKTIKVLRCVCFFCSKLLVDPTNP
KIRDILSKSKGQPRKRMAHVYELCKVKKICEGGDEMDTKLGEQQNREGDEEKTGHGGCGR
FQPRIKRMGLELVAEWKHVNEESQERKIMLTAERVHEIFKRISDEECLVMGMEPKFARPD
WMIVTVMPVPPLSVRPAVVMFGSARNQDDLTHKLSDIIKANNQLKRNEQNGAAAHIISED
TKMLQFHVATLTDNEMPGLPKAVQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFSARTV
ITPDPNLRIDQVGVPRSIAQNMTFPEVVTPFNIDRMHELVRRGANQYPGAKYILRDNGER
IDLRFHPKASDLHLQIGYKVERHMQDNDYVVFNRQPTLHKMSMMCHRVKVLPWSTFRLNL
SVTTPYNADFDGDEMNLHLPQSLETKAEISNLALVPRMIITPQSNRPVMGIVQDTLTAVR
KMTKRDVFINRGEMMNLLMFLPTWDGHVPQPAILKPKPLWTGKQLFSLIIPGRVNCIRTH
STHPDEEDSGPYKWISPGDTKVLIEDGMLISGILCKKTLGTSSGSLPHVVFMEMGYEVAG
LMYGHIQTVINNWLLLEGHSIGIGDTIADPQTYIDIQDTIKKAKVDVIDVIEKAHNDELE
PTPGNTLRQTFENQVNRILNDARDKTGGKAQKSLSDFNNFKAMVVAGSKGSKINISQVIA
CVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREG
LIDTAVKTAETGYIQRRLIKAMESVMVKYDGTIRNQVEQLVQLTYGEDGLDGTGVEFQSL
PTLKPSNKSFEKKFKFDASNERNMRKCLTEDIIKELIGDAHAISELEKEWDQLRDDREAL
RKIFPMGDSKVVLPCNLARLIWNAQKIFRINKHKPTELHPVKIVTGVADLCKRLNTVPGN
DRLSVQANYNATILMKCLVRSTLCAKRVTEEFRLSSEAFEWLLGEIETRFQQSHVQPGEM
VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLTGQ
GARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPNPQSTVISEDQEWVNVYYEMPDFDVSR
ISPWLLRIELDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDE
SKMQSDEEIVDKMEDDVFLRCIESNLLSDMTLQGIEAIAKVYMHLPNTDDKKRIFLTDDG
EFQGVAEWILETDGTALMKVLSQRDVDPIRTTSNDIVEVFATLGIEAVRKSIEKEMNHVI
SFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQETGALARCSFEETVDILMEAAAHG
EFDPMKGVSECIMLGQLAKIGTGSFDLLLDAEKCKYGMEIPQNMGPGLGGGAGTGFFFGG
GSSPAAGMSPQMTPWQQGATPAYGTAWSPGFGSGMTPGAAGFSPSGASESGYSPGYSPAW
SPQPGSPGSPASPYIPSPAGALSPSYSPASPAYVPSSPAVTPQSPGYSPTSPSYSPTSPG
YSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPKYSPTS
PSYSPTSPSYSPSSPQYSPSSPQYSPSSPNYSPTSPSYSPSSPKYSPTSPTYSPTSPKYT
PTSPEYSPSSPNYSHGYSSMSPTSPGYSPASPSYSPTSPKYSPASPTYSPSSPKYTPTSP
TYTPGTATSTTPKYSPTSPAYSAADDSDED
NT seq
5853 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacacaggcgattcaaacgcaactatgagggacgtgaagaaggtccagttcggc
attctcagtcctgatgaatgtcggcgtatgtctgtgaccgacggaggtattagatattca
gagacgatggaaggtgggcgtcccaaactcaatgggttgatggacccacggcaaggaact
attgacagaacatcaaggtgtcagacatgtgcgggcaatatggcagaatgcccaggtcac
tttggtcacatagaattgtcaaaaccagtgtttcatgtgggcttcttcacaaagactatc
aaagtgctgagatgtgtgtgcttcttctgctccaaattgttggtagacccgacaaatccc
aaaataagagacattctgtcaaagtctaaaggacagccaagaaaacgaatggcccatgtg
tatgaactttgtaaagtgaagaagatatgtgaaggaggagatgaaatggataccaaatta
ggagaacaacaaaacagagaaggagatgaagaaaaaacgggccatggaggttgtggtcgg
ttccagcctcggatcaaaaggatgggtttggaactggtggccgagtggaaacatgtaaac
gaagagagtcaagaaaggaagatcatgctgacagcagagagagttcacgagatattcaag
agaatatcagacgaggagtgtttagtgatgggaatggagcccaagtttgctcggcctgac
tggatgatcgtcactgtgatgcctgtgccacctctatctgttagaccagctgtcgtcatg
tttggttcagccagaaatcaggatgatttgactcacaagttatctgacattataaaagcc
aacaatcagctgaagaggaatgaacaaaatggagcagctgcacacatcatatcagaagac
accaaaatgttacaattccacgtggccacactcacagataatgagatgcctggccttcca
aaggctgtccagaaatcgggtcgtcctctgaaatctgttaaacaaagattaaagggaaag
gaaggcagagtccgaggcaacttgatgggcaagcgtgtggatttctctgccagaactgtc
atcactcctgatccaaatcttagaattgatcaggtcggtgtaccaagaagcatagcgcaa
aacatgacatttccagaagtggtcacaccctttaacatagacagaatgcacgagcttgtg
cggagaggagcaaatcaatacccaggagccaagtatattctacgagacaatggtgaaagg
atagacttgcggtttcatccaaaagctagtgatcttcatcttcagattggttacaaggtt
gaaaggcatatgcaagataatgattacgtggtattcaacagacagccaactctccacaaa
atgagtatgatgtgtcacagagtgaaggtgctgccatggtcaaccttcagattaaatctc
agtgtaaccacaccatacaatgccgactttgacggtgacgagatgaacctccacttaccc
cagtccctagagacgaaggctgagatctctaacctcgctctggtacccagaatgatcatc
actccccagtccaacaggcctgtcatgggtattgtacaggacacgttgaccgctgtccga
aagatgaccaagagagacgttttcatcaacaggggtgaaatgatgaatttgctgatgttt
ctgccaacatgggatggccacgtccctcaacccgccattctgaagcctaagccactatgg
acaggaaaacagctgttttccctcatcattccaggtcgtgtcaactgtataagaacccac
agcacacatcctgacgaggaggactcagggccatacaagtggatttctccaggggacacc
aaggtattgattgaagatggcatgctgatcagtggaatcctgtgtaagaagaccctgggt
acatccagcggctccctgccccacgtagtatttatggagatgggatacgaagtagcaggc
cttatgtacggccacatccagactgttattaacaactggcttctgttggagggtcatagc
atcggtattggagacaccattgctgatcctcagacttatatagatattcaggacaccatt
aagaaagccaaagttgacgtgatagacgttattgagaaagcccacaatgacgagttggaa
ccaacgccaggaaacactctgcgtcagacttttgaaaaccaggtgaaccgtatcctgaac
gacgctcgtgacaaaactggaggaaaagctcagaaatcattgtcagatttcaacaacttc
aaagctatggtggtggctggatccaaagggtcaaagattaacatttcccaggttattgcc
tgtgtggggcagcagaacgttgaaggtaaacgtattccgttcggttttcgacatcgtacc
ctgcctcatttcatcaaagatgattatggtcctgagtctaggggttttgtggaaaactcc
taccttgctggtctgacaccttctgagttctactttcacgccatgggagggagagaagga
cttattgatactgctgtgaaaactgctgagacagggtacattcagagacgtctgatcaaa
gctatggagagtgtaatggtcaagtacgacgggacaatccgaaaccaggtagaacagctt
gtgcagttgacctatggagaggatggactggacggtacaggggtcgagtttcagtcactt
cccacgctgaaaccctcaaacaaatccttcgagaagaagttcaaatttgatgcttccaat
gagagaaacatgcgaaaatgtctgacggaggatattatcaaggaactgattggtgatgct
catgccatatctgagctggagaaagaatgggatcagttacgtgatgatcgtgaagcatta
cggaagatcttccccatgggagacagcaaagtggtcctaccttgtaatcttgcaaggctc
atctggaatgctcagaaaatcttccgtattaacaagcacaaacccacagaactccatcct
gtgaaaatagtgacaggtgttgctgacctgtgcaaaagattaaacactgtccctggaaat
gacagactcagtgtgcaggcaaattacaatgctaccatacttatgaaatgtttggtgcgt
tccactctgtgtgcgaagagagtgacagaagagttcagactcagctcagaggcattcgag
tggcttcttggtgaaattgagacacgctttcaacaatctcatgtacaaccaggcgagatg
gtgggagcattggctgctcagtcgctgggagagcctgctacacagatgacactcaacact
ttccattatgctggagtatctgccaagaacgtaacacttggtgtgcctcgcctcaaggag
atcatcaacatctccaagaagcccaagactccttctctcactgtatacttgactggtcag
ggagcgagggatgcagaaaaggctaaggatgtgctatgtaggcttgaacacacgacattg
aggaaggtcactgcgaacacagccatttattatgatcccaacccccagagcacagtcatc
tcggaggaccaggaatgggtcaatgtctattatgaaatgccggactttgacgtgtccagg
atttcaccatggctgcttcgtatagagttggacagaaaaagaatgacagacaaaaaactc
actatggagcaaatctcagaaaaaatcactgcaggctttggagatgatctgaactgtatc
ttcaatgatgacaatgcagagaagttggtgctacgaatccgaatcatgaactcagatgaa
agtaaaatgcagagtgatgaggagatagtggacaagatggaagatgatgtcttcctcagg
tgtatcgaatccaatctcctatcggacatgactttgcagggaattgaagctattgctaag
gtgtatatgcatctccctaacactgatgacaagaagaggatattcctcacagacgatgga
gagttccagggagtcgcagaatggatcctggaaacagacggaactgcactgatgaaggtg
ctgagtcagcgagatgtcgatcccatccgtaccaccagtaacgacattgttgaagtcttc
gcaacacttggcatagaggctgtgagaaaatcgattgagaaagagatgaaccatgtcatt
tcctttgatggctcttacgtcaactaccggcacttggcgttgttgtgtgatgtgatgaca
gccaagggccacttgatggccatcactcgtcacggcatcaacagacaagagacgggtgca
ttggctagatgctcctttgaagaaacggtggatattctgatggaggctgcagcccatgga
gaatttgatcccatgaagggtgtgtctgagtgtattatgcttggacagctggccaagatc
gggactggaagttttgatcttctccttgatgcagagaagtgtaaatatggcatggagata
cctcagaacatgggaccaggccttggaggaggagctggcactgggttcttctttggtggt
ggaagcagtcctgcagctggcatgtctccacagatgacaccatggcaacaaggtgcaact
cctgcgtatggcactgcgtggtcacctgggtttggtagtggtatgacccctggagcggct
gggttttcaccctcaggagctagtgaaagtggttacagccctggatacagtcctgcatgg
tctcctcaacctggttctcccggatcaccagccagcccatacataccaagtccagctgga
gccctgtcgcctagctactcgccggcttcaccagcttatgtgccatcatccccagctgtc
actcctcagagtcctggatactccccaacaagcccttcatattctcctacaagtcctggt
tattcaccaacctcaccaaactacagtccaacaagtccatcctactccccgacctcgccc
tcatacagccccacttccccatcttattccccgaccagtccctcctactcgcccacaagt
ccttcctacagccctaccagtccttcatattcccctacatccccatcctactcgccaacc
agcccctcctacagtccaacatccccctcctacagtccgaccagcccctcatactcgccg
acaagcccctcctattccccaacatcaccatcttattctccaactagtccttcctattcc
ccgactagccccagctacagccctacatcccctagttattctccaacctcaccaagttac
tcgccaacctcaccaagttattccccaacctctccctcttattctcctaccagcccatct
tactccccgactagcccctcctacagccccagttcccccagctactctccttccagtcca
agttacagcccaagcagcccaagctattccccgagcagtccaaaatacagccccacaagt
ccttcatactccccaaccagtccttcatactcgcccagctctcctcagtactcgcccagc
tccccacagtattcaccatcctctccaaactactctccaacaagtccttcttactcccct
agtagccccaagtatagtccaacttctcccacatactccccaacctccccaaaatacact
ccaacatcacccgagtacagtccgagttccccgaactacagccatggatactcgtccatg
tccccaaccagccctggatactccccagctagtccatcatactccccaacaagcccaaaa
tattccccagctagtccaacatactccccaagcagccctaagtacacgcctacaagccct
acatacacacctggaacagccacttcaacgacacccaaatattccccgaccagtccggcg
tactcggctgctgatgacagcgatgaggactag
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integrated database retrieval system
