Pecten maximus (king scallop): 117345403
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Entry
117345403 CDS
T07399
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33-like
KO
K15542
polyadenylation factor subunit 2
Organism
pmax
Pecten maximus (king scallop)
Pathway
pmax03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117345403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmax03019
]
117345403
Messenger RNA biogenesis [BR:
pmax03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117345403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_IFT140_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_Gbeta
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_Aladin
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
eIF2A
Beta-prop_HPS5
WD40_RFWD3
Tricorn_2nd
Beta-prop_WDR41
Beta-prop_SPT8
Beta-prop_DCAF12
PEP5_VPS11_N
Beta-prop_WDR11_2nd
PROPPIN
Motif
Other DBs
NCBI-GeneID:
117345403
NCBI-ProteinID:
XP_033764367
LinkDB
All DBs
Position
16:complement(310489..345374)
Genome browser
AA seq
949 aa
AA seq
DB search
MDGGGVATMQMDAPRYGGQRMGRGYGRGGFGRGAGQPGGGDSGGTVGQAVMFDGKRMRKA
VHRKTIDYNSAVINYLQDRIWQRDHRDRRALQPESLYQIELTPPLHMKDNPMNCVTTKFI
RTSTNKFRCPIFCLAWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDTSVRAMQWSH
NDQWMVTADHSGFIKYWQTNMNNVKMYQGHKEPVRGISFCPTDNKFATCSDDGTVRIWDF
MKCHEEKILRGHGADVKCVDWHPQKCLIASGSKDNQQPLKLWDPKSGTSLATIHAHKGTV
MNLKWNQNGNWLLTASRDHLMKLFDIRNMKEEFQTFKGHKKEATAVAWHPVHEGLFVSGG
SDGAVMFWMVGTDREVGGMEEAHEGMVWSLAWHPLGHILVSGSNDHTTKFWTRNRPGDRM
RDKYNLNTLPGGSEHEMPEFEPDNSGISNIPGMGITAADKMLNEQINKNQESEVGAEELP
SIPGLDWSADEQYFREQQLLREIPKKKIPYARPIPWEFEQAWMVKHTGLLVPDGEGEEVS
GGGGGGSREKRRERRRKQQMERANENQQGSGDGQSNNNPPPLMQQGVQPNQMMGQGNQNN
APNIMGPGQGNMQGRGLLGNQPAGWGQQQGAGGQGNRQPGPGQHKQGMTHGGGRSQGLLG
PPMMQSQNQGGQGFQQNDQDFRGGQWNQGQTGNQGNFGNNDMPNDKQFQGDQDFRNDQDF
RGDQDFRQQQQRNDNNNQNFNDGQGFNRRGSNMQRGDNQRGFRGNQWEQQRGGNDRNSNF
GGEHGNNNFSNHGNDNFMDQDERYDSRGGGGMAQNRSRGRGQDDRRRGRRNEGGHNFGGS
QENFGNKRHWEEGPGDFRQQQGNQGPSDMETDQSGGWGQNSQRGRNFSSPGRGGNRGRGG
RGGDRGRGGDRGRGGDRGRGGDRGGHRGGANRGGDWGGGRGFGGGGGGR
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggatggaggcggggtagcaactatgcagatggatgctccaagatatggagggcagcgg
atgggacgaggatatggaaggggaggattcggtcgtggggcaggtcaaccaggtggaggt
gactccggaggaactgtggggcaggctgtcatgtttgatgggaaacgcatgcggaaggca
gtacacagaaaaactatagattataactctgcagttatcaactatctacaggataggata
tggcagcgagatcacagggatagacgagccctacagccagaatccctgtatcagattgag
ctgactccacctttgcatatgaaagacaacccgatgaattgtgtaaccactaaattcatt
cgtacttcaacaaacaagttcagatgtccgatcttctgtttagcttggacaccagagggg
aggcgtttagtgaccggggcatcaagtggagagtttactctgtggaatggcctgacattt
aactttgaaactatcctacaggcccatgacacatctgtaagagcaatgcaatggagccac
aatgaccaatggatggtgacggcagaccactcgggctttatcaagtactggcagaccaac
atgaacaatgtgaagatgtaccagggccacaaggagccagtgcgcgggataagtttttgt
ccaacggataataaatttgcgacatgctctgacgatggaacagtccgaatatgggatttt
atgaaatgtcacgaagaaaaaattttgagaggtcacggagcagacgttaagtgtgtggac
tggcaccctcagaagtgtctgattgcctcgggcagcaaggataaccagcaaccgctcaaa
ctgtgggatcccaagtctggcaccagcctcgcaaccattcatgcacataaaggaacagtt
atgaatctgaagtggaatcagaatggtaactggctgttgaccgcctccagggaccatctt
atgaagctgtttgatatccgcaatatgaaggaggagttccagaccttcaaaggtcataag
aaggaagctacagctgttgcttggcatccagtacacgaaggcctgtttgtgagtggggga
tcggacggggctgtcatgttctggatggttggaactgacagagaggttggagggatggag
gaagcccatgagggcatggtatggagcttggcctggcatcctctcggccatatccttgtg
tctggctccaatgatcatacgacgaagttctggacacgaaatcgccctggagaccgaatg
agagataaatataatctgaacaccttaccaggaggatctgaacacgagatgcctgaattt
gaaccagacaattctgggataagtaacattccagggatgggaataactgcagcagacaaa
atgttaaatgaacagataaacaaaaatcaagaaagtgaagtcggggcagaggagctgcca
tccattcctggcctcgactggtcagcagatgaacagtactttagagaacagcagcttctt
cgagagataccaaagaagaaaattccctatgctcgcccgataccctgggaattcgagcag
gcctggatggtgaagcatacagggctcctagtgcctgatggggaaggggaagaagtgtct
gggggaggaggaggaggaagcagagaaaaacgcagggagcgccgcaggaaacagcagatg
gaaagagcaaatgaaaaccaacaaggctctggggatggtcaatctaacaacaatcctcca
cctctcatgcaacaaggggtgcagcctaaccagatgatgggtcaagggaaccagaacaat
gctccaaacataatgggccctggacagggtaatatgcagggtagagggttactaggcaac
cagccagctgggtggggtcagcaacaaggtgcaggaggccagggaaatagacagccagga
ccagggcaacataaacagggcatgacacatggaggtggaagatctcagggattactggga
ccccccatgatgcaaagtcaaaatcaaggtggtcagggattccagcaaaatgatcaagat
ttccgaggtggacagtggaatcaaggacagaccggaaaccagggaaactttggtaacaat
gacatgcctaatgacaaacaattccaaggtgaccaagatttccgcaatgatcaggatttt
agaggtgatcaggacttccgtcaacagcaacagcggaatgataataacaatcagaacttc
aatgatggccagggatttaatcgaagaggaagcaacatgcagcggggtgataatcaaaga
ggtttccgtggtaaccagtgggagcagcaaagaggtggtaatgacagaaactctaatttt
ggtggtgaacatggtaacaataacttcagtaaccatggtaatgacaatttcatggaccaa
gatgaaagatatgatagtcgaggagggggtggcatggctcagaaccgcagtaggggaagg
ggtcaggatgaccgccgacgtggccgtaggaatgaagggggccacaactttgggggttcc
caagagaactttggtaacaagagacactgggaggaagggccaggtgatttccgacagcag
caaggaaaccagggtccttctgatatggagacagaccagtcaggtggttggggtcaaaat
agtcaaagaggacgtaatttctcaagtcccggtcggggaggtaaccgaggccggggagga
cgagggggtgacagaggacggggtggagacagaggaaggggtggggacagagggagggga
ggtgataggggaggacatagaggtggagcaaataggggtggggactggggaggggggagg
ggctttggaggaggtggagggggtaggtaa
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