Pseudoalteromonas maricaloris DSM 15914: R5H13_00880
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Entry
R5H13_00880 CDS
T09524
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pmaz
Pseudoalteromonas maricaloris DSM 15914
Pathway
pmaz03420
Nucleotide excision repair
pmaz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R5H13_00880 (uvrD)
03430 Mismatch repair
R5H13_00880 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmaz03400
]
R5H13_00880 (uvrD)
Enzymes [BR:
pmaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R5H13_00880 (uvrD)
DNA repair and recombination proteins [BR:
pmaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R5H13_00880 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
R5H13_00880 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
AAA_11
SAP18
ChrB_N
GREB1_2nd
Motif
Other DBs
NCBI-ProteinID:
WOX28868
LinkDB
All DBs
Position
1:complement(235258..237423)
Genome browser
AA seq
721 aa
AA seq
DB search
MDVSELLDGLNDKQRDAVAAPLQNMLVLAGAGSGKTRVLVHRIAWLMQVEHASAFSIFAV
TFTNKAAKEMRARVEATLNGPVGGMWIGTFHGLAHRMLRAHHREAKLPESFQILDSDDQQ
RMIRRLLKAMNIDEKKWPPKQLSWYISARKDEGLRPKDIQAYDVNEQLMLNVYSAYQDAC
DRAGLVDFAEILLRCYELLQQQPTLLRHYQQRFRHMLVDEFQDTNSIQYLWLRLLAGSDN
NIMIVGDDDQSIYGWRGAKIENIKRFLDDFNAETIRLEQNYRSTATILKASNALIENNAE
RMGKSLWTDGNQGEPISIYAAFNELDEARFVVGKIKSWLQAGNALSDSAVLYRNNAQSRV
LEEALLQEGLKYRIYGGMRFFERQEIKDALSYLRIISNRNDDAAFERVINTPTRGIGDKT
LSHIRDCARHESLSLWDAAKAVLAQKHLAGRAATAVTKFIELVEQLDDKIAELELAQQAQ
TAIEQSGLMAMYQAEKGEKGRARVENLEELISACGQYELPIDEDFTSPLQGFLAYTSLEA
GEGQADEHEDAVQMMTLHSAKGLEFPLVFMVGVEEGMFPSQQSNEESGRLEEERRLCYVG
MTRAMDKLYISHAESRRLYGQEKHHSPSRFLREIPEDCMEEIRIKTQISRPANSGRFSPS
ISHATFEDSGFNLGQRVLHAKFGAGTVLNYEGAGAQSRIQVSFDDVGSKWLVTAYARLQA
L
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcagaattactcgacggcctcaacgacaaacagcgcgatgcagtcgccgca
cctctgcaaaacatgttagtgctcgcaggtgcggggtcaggtaaaacacgagtactcgtt
catcgtattgcttggcttatgcaagttgagcacgcctctgcatttagtattttcgcggta
acctttaccaataaggcagccaaagaaatgcgtgctcgtgttgaagcgacgctcaatggc
cctgttggtggcatgtggataggtactttccacggcctagcccaccgcatgttacgcgcc
catcaccgtgaagctaaattaccagaatcatttcaaattctagatagcgatgatcagcaa
cgaatgatccgccgtttgctcaaagccatgaatatcgatgagaaaaagtggccacctaag
cagttaagctggtatatcagcgcgcgtaaagacgaaggattaagacccaaagatattcaa
gcatacgatgtcaatgaacagctgatgttgaatgtatatagtgcttaccaagatgcctgt
gatagagccggtcttgttgattttgccgagatcctattgcgctgctacgagctattacag
caacaacctaccttgctgcgtcactaccaacaacgcttccgtcatatgctagtggacgag
ttccaagataccaacagcattcaatatttgtggctacgcctgcttgcaggtagtgacaac
aatattatgatcgtaggggatgacgaccagagtatttacggctggcgtggtgcaaaaata
gaaaacatcaaacgttttctggacgactttaacgccgaaacgatccgacttgagcaaaat
tatcgttctactgcaaccattctaaaagcatccaatgcgctcattgaaaacaacgccgaa
cgaatgggtaaaagtctctggaccgacggtaaccaaggcgagccgatttcaatttacgcc
gcttttaatgaacttgatgaagcacgctttgtggttggcaaaattaaatcttggttacag
gctggcaatgcgctcagcgacagcgccgtactctacagaaacaacgcacagtcccgggtg
ttagaagaagccttacttcaagaagggctaaaataccgtatttatggcggtatgcgcttt
ttcgagcgtcaagagattaaagatgccttatcctacctgcgcattattagtaatcgtaat
gacgatgcggcatttgagcgtgtgataaacacgcctacccgtggtattggtgataaaaca
ttaagtcatattcgcgattgtgcacgtcacgaatcactctcactttgggatgcagccaaa
gctgtgcttgcgcaaaagcatttagctggaagagctgctacggcggtgacaaaatttatt
gaattagtcgagcagctcgacgataaaattgccgaacttgaactggcacaacaagcgcag
acagccattgagcagtcaggtctcatggcaatgtatcaagccgaaaaaggcgaaaaaggc
cgcgctcgagtggaaaacttggaagaattgatcagtgcttgtggtcagtatgagctgcct
atcgatgaagattttacttcaccattacaaggctttttagcctatacctctttggaggca
ggcgaaggccaggctgacgagcacgaagacgcggtacaaatgatgacgctgcactcggcc
aaaggtctcgagttcccattggtctttatggttggggtggaagaaggcatgttcccatcg
caacaaagtaatgaagaatcgggccgcttggaagaagagcgccgtttgtgctacgtcggt
atgacgcgtgccatggataagctttacattagccacgcagaaagtcgccgcttgtatggt
caagaaaaacatcacagcccttcaaggttcttacgtgaaattcctgaagactgcatggaa
gaaattcggattaaaacgcaaatttctcgtccggctaactcgggtcgattcagcccatca
atcagtcacgcgacctttgaagatagcggctttaatttaggccagcgtgtcctccatgcc
aaatttggtgcaggcacagtgcttaactatgaaggtgcaggtgctcaatcacgcatccaa
gttagctttgatgatgttggtagtaagtggttagtaaccgcctatgcaagacttcaagca
ctctaa
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