Pseudoalteromonas maricaloris DSM 15914: R5H13_02345
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Entry
R5H13_02345 CDS
T09524
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pmaz
Pseudoalteromonas maricaloris DSM 15914
Pathway
pmaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R5H13_02345 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaz03019
]
R5H13_02345 (rnr)
03016 Transfer RNA biogenesis [BR:
pmaz03016
]
R5H13_02345 (rnr)
Enzymes [BR:
pmaz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
R5H13_02345 (rnr)
Messenger RNA biogenesis [BR:
pmaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R5H13_02345 (rnr)
Transfer RNA biogenesis [BR:
pmaz03016
]
Prokaryotic type
tRNA degradation factors
R5H13_02345 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
OB_Dis3
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
WOX29132
UniProt:
A0A8I2H6Z8
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All DBs
Position
1:567340..569829
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AA seq
829 aa
AA seq
DB search
MPKQDPYLDREQQKYDNPVPSREFILEHIKSAAKPPSFSQLCNDLKVQDEERQIALKRRL
RAMERDGQLHFNKFKCYTIPSDDGLVKGRVVGHRDGFGFLEVEGEPKDWFITKYQMERVL
HGDWVLAKAGSRGSGGKVEARIVRVLEKERAPVVGRYFVEFGMAVVVPEDPRITQDIIIV
PGQENGARHNQMVQVEITQSPSKQMNAMGKVLEVLGDHMAPGMEIEVALRNHDIPHEWPS
EVEAQVANLGEFVEESAKQGRVDLRDLPLVTIDGEDARDFDDAVYCERKKSGGWRLWVAI
ADVSHYVGKGTALDKEAIERGNSVYFPEQVVPMLPKVLSNGLCSLNPKVDRLCMVAEMTV
SEAGRLSGYRFYEAVMNSHARLTYTKVHAILQGDEKLRADYQPLVPHLTELHNMYMALKA
ARQERGAIEFETLETRFVFNAHRKIDSIVPVVRNDAHKLIEECMILANVSAAKLLEKHEA
HSLYRVHDEPDPERLSQFRQFLQDLGIESQLPNDPSPEELTQALESLGDRPEKELIQTML
LRSMKQAVYQPENIGHFGLALKAYAHFTSPIRRYPDLVVHRAIKGILQQQQQPVSGAYIY
NEDEVKQLGEQCSMTERRADDATREVADWLKCEFMQDHVGDEFTGVISSVTNFGLFVRLD
DLQIDGMIHVSNLGHEYFHFDGAKQCLIGEHSRTVFRLGDKLTVVVASVSLDDRRINLAL
AEEGQQDRYARRRKSPKSTASSVREQLKTGKIPGAKRRDGEASGRDKDNKGDDKAKKRKR
TTPKGELKQAKKAGTLKSKKKSTSKKAKAAKGKAKRPGKNERNRSKKAQ
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacaggatccctatctcgatagagaacagcaaaaatacgacaatccagtacct
agtcgcgaatttatcttagaacacattaaaagcgcggccaaaccaccttctttctctcaa
ttgtgtaacgatttaaaagtgcaagacgaagaacgtcaaattgcgcttaaacgccgcttg
cgcgcaatggagcgagacggtcaactgcacttcaataaatttaagtgttacaccattcca
agtgatgatggtctagttaaaggccgcgttgttggacaccgtgacggctttggcttttta
gaagtcgaaggcgaacccaaagattggtttatcactaagtatcaaatggagcgcgtgctg
catggcgattgggtgttagcgaaggcgggcagccgaggctcaggtggtaaggtggaagcg
cgcattgtgcgggtacttgaaaaagagcgtgcaccagtcgtcggtcgttattttgttgag
tttggcatggcagtcgtggtgccagaagacccgcgtattactcaagatatcatcatcgta
cctggccaagaaaatggtgctcgccataatcaaatggtgcaggtagagatcactcaaagc
cctagcaaacaaatgaatgcaatgggtaaagtacttgaggtgctcggcgatcatatggca
ccgggtatggaaattgaggtggcacttcgtaatcatgacattccgcatgagtggccaagt
gaagtagaagcacaagttgcaaatcttggtgagtttgtagaagagtctgccaaacaaggc
cgtgtcgacctgcgcgatttaccgttagtgaccattgacggtgaagacgcacgtgacttt
gatgacgccgtatattgcgagcgtaaaaagtcaggaggttggcgtttatgggttgctatt
gcggatgtatctcattatgtaggtaaaggcactgcgcttgataaagaagcgattgagcgt
ggtaactcagtgtattttcctgagcaagttgtgccaatgctacctaaggtactctccaac
ggcttatgttcattaaatccaaaggtagaccgcttgtgtatggttgcggaaatgaccgtg
tccgaagcgggtcgtttgtctggctaccgtttttacgaagccgtgatgaactctcatgct
cgtcttacttacaccaaagtccatgcgattttacaaggtgacgaaaagctcagagcggat
tatcagcctcttgtgcctcatctgactgagctccataacatgtatatggcgctgaaggct
gcaaggcaggagcgtggcgcgattgagtttgaaaccctagaaacgcgctttgtgtttaat
gctcatcggaagattgactctatcgtgcctgtggttcgtaacgacgcccacaagctgatt
gaagagtgcatgatcttggcgaacgtgtcagcagcaaaactgttggaaaaacacgaagcc
catagcttgtaccgtgttcatgatgagccagaccctgaaagattgagccaatttaggcaa
ttcttgcaagacttgggtattgaaagccaattacctaacgatccgtcgccagaggagttg
acccaagcgcttgagtcattgggagatcgccctgaaaaagaattgatccaaactatgtta
ctgcgctcaatgaagcaagcagtatatcagccagaaaatattggccactttggtttggca
ttaaaagcctatgcacactttacctcacctattcgccgttatccggatctggtggtgcac
cgcgcaatcaaaggtattttacagcagcaacaacagccagtaagtggcgcttacatctac
aatgaagatgaagtgaagcaactgggtgagcagtgctcgatgacagagcgccgcgctgat
gacgccactcgtgaagtcgctgattggcttaaatgtgaatttatgcaagatcatgttggc
gacgagtttactggtgtgatctcatcggtcaccaactttggattatttgtgaggttagac
gacctacagattgacgggatgatccatgttagcaatttagggcatgagtacttccacttt
gatggtgcaaagcaatgtttgattggcgagcatagtcgcacggtgtttagacttggcgat
aaacttaccgttgtggttgcttcagttagcttggatgatcgccgcatcaacttagcttta
gctgaagaaggtcagcaagacaggtatgcaaggcgtcgaaaatctccaaaaagcacagca
agtagtgttcgtgagcagctaaaaacgggtaaaatcccgggagctaagcgccgtgacggt
gaagcgtctggtcgcgataaagataataaaggcgatgacaaagccaaaaagcgcaaaaga
acgacccctaagggtgagctcaaacaggcgaaaaaggcaggcacgctgaagtcgaagaaa
aaatcgacgagtaaaaaagccaaagcggcaaagggcaaagcaaaacgcccaggtaaaaac
gaaagaaatcgtagcaaaaaagcgcaatag
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