Pseudoalteromonas maricaloris DSM 15914: R5H13_05205
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Entry
R5H13_05205 CDS
T09524
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pmaz
Pseudoalteromonas maricaloris DSM 15914
Pathway
pmaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R5H13_05205 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaz03019
]
R5H13_05205 (pnp)
03016 Transfer RNA biogenesis [BR:
pmaz03016
]
R5H13_05205 (pnp)
Enzymes [BR:
pmaz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
R5H13_05205 (pnp)
Messenger RNA biogenesis [BR:
pmaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
R5H13_05205 (pnp)
Transfer RNA biogenesis [BR:
pmaz03016
]
Prokaryotic type
tRNA degradation factors
R5H13_05205 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
S1_2
KH-I_KHDC4-BBP
CsrA
Motif
Other DBs
NCBI-ProteinID:
WOX29662
UniProt:
A0A8I2H861
LinkDB
All DBs
Position
1:1195961..1198087
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AA seq
708 aa
AA seq
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MQAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGRREAAPGQDFFPLTV
NYQEKMYAAGRIPGGFLKREGRPSDGETLTARLIDRPIRPLFPDGFVNEVQVIATVVSVN
PEIQPDIVALIGTSAALAISGIPFNGPLGAARVGFIDGQYVLNPTLKELETSKLDLVVAG
TENAVLMVESEAEVLTEEEMLGAVVYGHEQSQAIIKAIEEFRAEAGKAAWDWTAPEKDLT
LAEKVAAIAEQKVGDAYRITDKVARKEALSEAKAEVIEKLGAEVAEGESLDEQVVGKTFS
SLEKKIVRSRIIAGEKRIDGREPDMVRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT
ERDAQMLDDLTGTHKHHFMLHYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIAAVMPTL
AEFPYSVRVVSEITESNGSSSMASVCGTSLALMNAGVPVKASVAGIAMGLVKEGEDFVVL
SDILGDEDHLGDMDFKVAGTANGVTALQMDIKIEGITKEIMQIALRQAKAARLHILGVMD
QAISAPSEELSEFAPRIYTMKIPAKKIAEVIGKGGATIRQLTEETDTTIEIEDDGTIKIA
ATNGNSAQAAISRIEALTAELEVGTLYTGKVIRIVDFGAFVNVLPGKDGLVHISQISEER
VNNVSDHLTVGQEVKVKVLEVDRQGRVRLSIKEAQEKKAEQPKEEGAE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagcaattattaaagaatttcaactaggtcaacacacggtgactctagaaacaggt
gctatcgcacgtcaagctgacggcgcagtacttgcaagcattggtgatacttcggtactt
gttactgttgtaggaagaagagaagcagctcctggccaagactttttcccactaacggtt
aactaccaagaaaaaatgtacgctgcgggtcgtatccctggtggtttcttgaagcgtgaa
ggtcgtccttcagacggtgaaacactaaccgctcgtctaatcgaccgtccaattcgtcct
ctattcccagacggctttgtaaacgaagttcaagttatcgctacagtggtttctgtaaac
ccagagatccaacctgatatcgttgctttgattggtacttcagcagcactagctatctca
ggcattccattcaatggcccgctaggtgcggcgcgcgttggtttcatcgacggtcaatac
gtacttaaccctacgctaaaagaactagagacaagtaagcttgacctagttgttgcgggt
actgaaaacgcagtactaatggttgaatcagaagctgaagtgttaactgaagaagaaatg
cttggcgctgttgtatatggtcatgagcaatcacaagctatcatcaaagcaatcgaagaa
ttccgtgctgaagctggtaaagctgcatgggattggacagcacctgaaaaagatttaaca
ctagctgaaaaagtcgctgcaattgcagagcaaaaagtaggtgatgcttaccgtattact
gacaaagttgcacgtaaagaagctctttctgaagcaaaagcagaagtcattgaaaagcta
ggcgctgaagttgctgaaggcgagtcactagacgagcaagtggtaggtaaaacattcagc
tcacttgagaagaaaattgtacgtagccgtatcattgctggcgaaaaacgtatcgacggt
cgtgaaccagatatggttcgtgcgctagatgtgatgacgggtgtactgccacgtactcac
ggttctgcaatctttactcgtggtgaaacccaggcacttgtaactgcaacccttggtact
gagcgtgacgcgcagatgctagacgacctaactggtactcacaagcatcactttatgctt
cactataacttccctccattctgtgtaggtgaaacgggttttgtagggtctcctaagcgt
cgtgaaatcggccacggtaacctagctaagcgtggtattgcggcagtaatgccaacactg
gctgaattcccatattcagtacgtgtagtatctgaaatcactgaatcaaacggttcatct
tcaatggcatcagtatgtggtacttctcttgcgctaatgaacgctggtgttccagttaaa
gcgtcagttgctggtatcgcgatgggtctagtgaaagaaggcgaagatttcgttgtactt
tctgacattcttggtgacgaagatcacttaggtgatatggacttcaaagtagcgggtaca
gcaaacggtgtaactgcactacaaatggatatcaagattgaaggtatcaccaaagaaatc
atgcagatcgcgcttcgccaagcgaaagcagcgcgtctacacatcctaggtgtgatggac
caagcgatttctgcaccttctgaagagctatctgagttcgctccacgtatctacacgatg
aagatccctgcgaagaagattgctgaagttatcggtaaaggtggtgcaacaattcgccag
cttactgaagaaacagatacaacgattgaaattgaagacgacggtactatcaagatcgct
gcaacgaatggtaatagcgcacaagctgctatttcacgtatcgaagcgcttacagcagag
cttgaagttggtacgctttacactggtaaagttatccgtatcgtagacttcggtgcgttt
gtaaacgtacttcctggtaaagatggtctagtgcacatctcacaaatcagtgaagagcgc
gtaaataacgtttcagatcacttaactgttggtcaagaagtgaaagttaaagtacttgaa
gttgaccgccaaggccgtgttcgcttaagtatcaaagaagcacaagagaaaaaagctgag
cagcctaaagaagaaggcgctgagtaa
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