Pseudoalteromonas maricaloris DSM 15914: R5H13_07375
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Entry
R5H13_07375 CDS
T09524
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pmaz
Pseudoalteromonas maricaloris DSM 15914
Brite
KEGG Orthology (KO) [BR:
pmaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaz03019
]
R5H13_07375 (hrpA)
Enzymes [BR:
pmaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
R5H13_07375 (hrpA)
Messenger RNA biogenesis [BR:
pmaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
R5H13_07375 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
nSTAND3
T2SSE
NACHT
AAA_22
HA2_N
ResIII
AAA_23
ABC_tran
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
WOX30083
LinkDB
All DBs
Position
1:1699016..1702909
Genome browser
AA seq
1297 aa
AA seq
DB search
MQVDSLFKELNSCLKKDHFILKKRLHGAKKITDQEKQKQVVAKVAAAIAKSQELKVTRSA
NIPAVEYPEQLPVSQKKDDIKAAIANNQVVIVAGETGSGKTTQLPKICLELGRGVDGYIG
HTQPRRLAARSVSTRISEEIGCEMGQEVGFKIRFSDQVSDNTYVKLMTDGILLSEIQQDR
FLNQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPERFSKHFSDAPI
IEVSGRTYPVEVRYRPVEDVDSQNSEAENDQLQGIFDAVDELCAEGPGDILVFMNGEREI
RDTADALAKRNLKGVEILPLYARLSNAEQNRIFAAHSQRRIVLSTNVAETSLTVPGIRYV
IDPGTARISRYSYRTKVQRLPIEAVSQASANQRKGRCGRVASGICIRLYSEDDFLGRPEF
TDPEILRTNLASVILQMLALGLGDISQFPFVQAPDSRNIKDGMSLLEELEAIVPAQRREK
AKLTESGRKLSRLPIDPRLAKMVMSGAQNNALWEAIVITAALSIQDPRERPQDKRAAADE
KHNRFECEHSDFVAYLNLWNYIEAQQQALTRNQFRKQCQKDFLAYMRVREWQDIVYQLTT
VCEELGFKINSSPASDEAVHQSLLSGMLSHIGVKDEKQKQVFKGARNSQFHIFPGSTLFK
KSPKWLMSAELVETSKLYARVNAKIDVNWIAPLAKHLVNSSYSEPHWEKKAGAVIAFEQQ
TLYGLIIVGRKRTVYSDIDPVVSREIFIREALANGQLGQSEGFLSANQKLVEEVQALEDK
ARRRDILVDEEDVVAFYNDRIPQDVNNRAAFSKWWRSQKQKDKRFLHMTRDLLMKHDAEH
ITDTHYPDTWQQGHLILPLSYHFDPGQALDGVVVNIPLALLNQVQDEGFDWHIPALRHEL
VCGLIKSLPKTLRRNFVPAPNYADAVLAAVEVMQGSFIEAVANRLLRMTGVKVAESDWDV
SSLEPHLKMQFQVVDDKGKVIAHSFDLLALKAKLQGQVTETLSQVAEQGIEQTDIQQWDF
GELPEQYTKKQGNYEIKAFPALVDKKQSAAIELFDNEVKAQAAHQAGLRRLVLLNVPSPV
KYLQQHLPNKAKLGLYFNPFGKVHDLVDDCTQAGVDKLLRAFGEIRDDVAFEKAKEHIRA
ELGDTVVEIAKQVEAVLSIAHSINKRMKGRVDLTMITAHGDIKSQLSGLIFKGFVTAHGA
DKISDILRYMKAIEKRLEKLAVDPNRDRQCVLELEKVAAAYQDKLAKIPSGLPVPESLIN
IFWMQQELRVSLFAQTLGTAYPISAKRVLNSIKECEI
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggttgactcgctgttcaaagagctaaattcatgtcttaaaaaggatcacttcatc
ctcaaaaagcgcctccatggtgcgaaaaaaattaccgatcaagaaaagcaaaagcaggta
gtcgcaaaagtagcggctgcgattgcaaaaagccaagaattaaaggtaacaagaagtgcc
aatattccagcagtagagtatcctgagcaactacccgtcagccagaaaaaagacgacatc
aaagcagccattgcgaataaccaggtggttattgttgccggcgaaacaggctcagggaag
accacgcagctgcctaaaatttgtttagagttaggtcgaggcgtggatggctatattggt
catacacaaccaagaagactagcggcaagaagcgtatccacccgtatctcagaggaaatt
ggctgcgagatggggcaagaagttggatttaaaattcgcttctcagatcaagtctctgac
aatacatacgtaaaactgatgaccgacggtattttgctctcggaaattcaacaagacaga
ttcctcaaccagtacgacacaatcatcattgatgaagcgcacgagcgtagcctgaatatt
gattttattctgggttatttaaagcagctgttgccgaagcgtccagatcttaaagtgatt
attacctcagcaaccattgacccagaacgtttttccaaacattttagtgacgcacctatt
attgaagtgtcaggacgaacttatccagtagaagtgagatatcgtccagttgaagatgta
gactcacaaaatagcgaagcagaaaacgaccagttacagggcatttttgatgcggttgat
gagctttgtgccgaaggaccaggggatattttggtatttatgaacggtgagcgtgaaatt
cgtgacaccgctgatgcgctggcaaaacgcaatttaaaaggcgttgagattttacctttg
tatgcgcgcctgtctaatgccgaacaaaatcgcatttttgcggcccatagccaacgacgc
atcgtattgtctacaaacgttgcagaaacatcattgaccgtaccaggtattcgctatgtt
atcgacccgggtactgcgagaataagccgctacagttatcgaaccaaagtgcaacgctta
ccgattgaagcggtatcacaagccagtgcaaaccaacgtaaaggtcgatgtgggcgtgtg
gcatccggtatttgtattcgcttatattctgaagacgactttttagggcgtcctgagttt
accgaccctgaaattctaagaaccaatttagcttcggttattttgcaaatgctggcactt
ggacttggtgatataagtcaattcccatttgtacaagcgcctgatagccgtaatatcaaa
gatggtatgtcgttacttgaagagttggaggcgatagttcctgcacagcgcagagaaaaa
gccaagctcacagaatcaggtcgtaaactaagtcgcttacccatagacccaaggcttgcc
aagatggtgatgtcaggggcacaaaacaacgcgctttgggaagcgatagtgatcactgcg
gcactgtctattcaagacccaagagagcgtcctcaagacaaacgtgcagcagctgacgaa
aaacacaatcgctttgagtgcgaacactctgactttgttgcatatctaaacctatggaat
tatatcgaagcgcagcagcaagcactaacgcgcaaccagtttagaaagcaatgccaaaaa
gactttttggcctatatgcgcgtacgtgagtggcaagatattgtatatcagctgaccacg
gtatgtgaggagctcggctttaaaataaatagcagtcctgcaagtgatgaggctgtccat
caatcattgctaagcggtatgcttagccatattggtgtgaaggacgaaaagcaaaagcaa
gtttttaaaggcgcacgtaacagccaatttcatattttccccggttcaacactgtttaag
aaaagccctaagtggctgatgtctgcggagcttgtggaaaccagtaaactttatgctcgg
gttaatgccaagatcgatgtaaattggattgcaccgctcgccaagcatttagttaatagc
agctatagcgagccgcattgggaaaaaaaggctggggcggttatcgcatttgaacaacaa
accttatacggcttgatcatcgttggccgcaaacgcacggtgtatagcgatattgatcct
gtggttagccgagagatatttattcgtgaagcgttagcaaacggtcaacttggccagagc
gaaggttttttaagcgcaaaccaaaaattggttgaagaagtgcaggcgcttgaagataaa
gcgaggcgtcgcgatatcctagtcgacgaagaagatgtggttgcgttttataacgatcga
attccacaagacgtaaataatcgtgctgcgtttagtaaatggtggcgttcacaaaagcaa
aaagacaaacgctttttgcatatgacgcgcgatctgttaatgaagcatgacgccgaacat
atcacggatactcattatccagatacgtggcagcaagggcatttgatcttgcctctcagt
tatcactttgacccaggccaagcactagacggcgtggtggtcaatattcctctggcacta
ttgaaccaagttcaagatgaaggttttgattggcatatccctgcgctcagacatgagctg
gtttgtgggcttattaagtcgctgccgaagaccttaagacgtaactttgtgccggcacca
aattatgccgatgctgtgcttgccgccgttgaggtaatgcaaggctcatttatagaagcg
gtggccaaccgtttactcagaatgacaggtgtcaaagtcgccgagtcagattgggacgtt
agttcacttgagccgcacttaaaaatgcaatttcaggtagttgatgacaaaggcaaggtg
atagcccatagctttgatttattggcacttaaggcaaagttgcaagggcaagtgaccgag
acgctttcgcaagtggcagagcaagggattgagcagacggatattcagcagtgggatttt
ggcgagctgccagagcaatatactaaaaagcaaggcaattatgagattaaggctttccct
gcattagtcgataaaaagcaaagtgcggctatagaactgtttgataacgaagtaaaagcc
caagcggcgcatcaagcaggattgcgccgtcttgtgctactcaatgttccttcgcctgtt
aaatacctgcagcaacacttaccaaataaggctaagttaggattgtactttaaccccttt
ggtaaagtgcatgatttagttgatgactgtacgcaagctggggttgataagttgctgcgt
gcatttggtgagatcagagatgacgtcgcgtttgaaaaagccaaagaacacattcgagct
gagctaggtgacactgtagttgaaattgcgaagcaagttgaggctgtgcttagtattgcc
cacagtattaacaagcgtatgaaaggcagagtggatctcacgatgatcaccgcgcacggc
gacataaaatctcagttatccggtcttatctttaaaggctttgtcaccgctcatggtgct
gacaaaatctctgatattttgcgttacatgaaagcgattgaaaaaaggcttgaaaaactt
gcggtagatccaaacagagataggcagtgtgtactagaattggaaaaagttgctgcggcc
tatcaagacaagttggcaaaaattccttctggattacctgtaccagagtcgcttataaat
attttttggatgcaacaggaacttcgcgtgtctttgtttgctcaaacattaggaacggct
tacccaatttcggctaaacgcgttctgaattcgataaaagagtgcgaaatataa
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