Pseudoalteromonas maricaloris DSM 15914: R5H13_11015
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Entry
R5H13_11015 CDS
T09524
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pmaz
Pseudoalteromonas maricaloris DSM 15914
Brite
KEGG Orthology (KO) [BR:
pmaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmaz03032
]
R5H13_11015 (topA)
03400 DNA repair and recombination proteins [BR:
pmaz03400
]
R5H13_11015 (topA)
Enzymes [BR:
pmaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
R5H13_11015 (topA)
DNA replication proteins [BR:
pmaz03032
]
Prokaryotic type
DNA Topoisomerases
R5H13_11015 (topA)
DNA repair and recombination proteins [BR:
pmaz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
R5H13_11015 (topA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
CEP104_ZnF
Motif
Other DBs
NCBI-ProteinID:
WOX27204
LinkDB
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Position
1:complement(2513237..2515882)
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AA seq
881 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGKDYIVKSSVGHVRDLPTSGAGKTKGLATKSPAEVRKMS
PEEKAQYKKQKDYANLVARMGIDPEKGWEPHYEILPGKEKVVQELQKLAEDADHIYLATD
LDREGEAIAWHLEQIIGGDESKYKRVVFNEITKNAITQAFEAPGDLNTDMVYAQQARRFL
DRVVGFMVSPLLWQKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKATKD
DIRLAVTKFKGEAFKPVNKAQADTAVQVLENSAYEVVKVEEKPSKSKPSAPFITSTMQQA
ASTRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSNDALEMCRGYIDSEFGSKYLPEAP
LRYSAKGNAQEAHEAIRPSDVTILSGHLDGVEADAKKLYELIWRQFVACQMMPAEYDLTT
LTVAAEDYTLKAKGRVLRFDGWTRVQPAVRKKNEEEQALPSVSVGDKLDLIAIDPKQHFT
KPPARFSEASLVKELEKRGIGRPSTYAAIISTIQDRGYVRVENRRFYAEKMGEIVTDRLV
ENFNDLMDFDFTAKMEGRLDDIAEGERLWTQVLDKFYADFSNQLEIAAGDESEGGMRQNV
MVETDIDCPTCSRKMGIRTASTGVFLGCTGYNLPPKERCTTTINLVSGDEAVAADADEEA
EAESLRHMKRCPICETAMDSYLIDETKKLHVCGNNPACKGYVIETGAFKIKGYDGPLIEC
DKCGSDMQLKSGRFGKYFGCTNEDCKNTRKLLKNGEAAPPKEDPVPLPELECEKSDAHFV
LRDGASGIFLAAHTFPKSRETRAPKVSELKRFRDRISPKFYYLADAPEQDSDGNPAIVRY
SRKTKTQYVMTEVDGKATGWKATYSNGKWVEEEKTTKKKKA
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctagtaattgtagagtctcccgcgaaggcaaaaacaatcaataaatac
ctcggcaaggattacattgttaaatccagtgtaggccatgttcgagatcttcctacctca
ggggcaggtaagacgaaaggcttggcaactaagtcgccagctgaagtacgtaaaatgtca
cctgaagaaaaagcgcaatataaaaagcaaaaagattatgcaaatttagttgcgaggatg
gggattgatcctgagaagggttgggaaccgcattacgaaattttgccgggtaaagaaaaa
gtagttcaagaactacagaaacttgctgaggatgctgaccatatctatctcgcaaccgat
ttggatagagaaggggaagctattgcttggcaccttgaacagattatcggtggcgatgag
agcaaatataagcgtgtggtctttaacgagatcaccaaaaacgcgataacccaagcgttt
gaagcgcctggcgaccttaacaccgacatggtatatgcgcagcaggcaagacgattcctt
gaccgagttgttggctttatggtatccccgctgctttggcaaaaagtagcaagagggtta
tcggcaggtcgcgtacaatctgttgctgtgagattacttgttgagcgagagcgtgagatt
aaagcgtttattccagaagagttttgggatattcacgccgatgttaaagcaacaaaagat
gatattcgcctagcggttactaagtttaaaggtgaggcatttaagcctgtaaataaagcg
caggctgatactgccgtacaagtgcttgaaaacagtgcttacgaagtagtcaaggttgaa
gaaaagccaagcaagagtaagccaagtgcgccatttattacctcgacaatgcagcaagcg
gcaagtactcgtttaggctatggcgtaaagaaaaccatgatgttagcgcagcgtctatac
gaagcgggttacatcacctatatgcgtacggactcgacgaatttatcaaacgatgcgtta
gaaatgtgtcgtggctatatcgatagtgaatttggtagtaagtatcttccagaagcacca
ctgcgttattccgcaaaaggcaacgcacaagaagcgcacgaggcaattcgtccatctgat
gtgacgatcttatcaggtcatttagacggcgtagaggcagatgctaagaagctctatgag
cttatttggcgtcagtttgtggcgtgtcagatgatgccagcagagtatgacctaacgacg
ctgaccgtcgccgcggaagattacacgttaaaagcgaaagggcgcgtgctacgttttgat
ggttggacacgtgtacaaccagccgttcgtaagaagaatgaagaagagcaggcgcttcca
agtgtttcagttggcgacaagcttgatcttattgcgattgatcctaagcagcactttact
aaaccaccagcacgtttcagcgaagcaagcttagttaaggaattagaaaagcgtggtatt
ggtcgtccatctacctatgcagctatcatttcaacgattcaggaccgtggttatgttcga
gttgaaaaccgccgtttttacgctgaaaaaatgggcgagatcgtaactgacagactcgtt
gagaatttcaacgatttaatggactttgactttaccgccaaaatggaaggtcgccttgat
gatatcgcagaaggcgaacgtttatggacgcaggtacttgataagttttacgccgacttt
tctaaccagctagaaatagccgctggcgatgaaagtgaaggcggcatgcgacaaaatgtg
atggttgaaacagacatcgattgtcccacatgttcacgcaaaatgggtattcgtactgct
tctacaggggtattccttggctgtacaggctataatttgccgccaaaagagcgttgtacc
accacaattaatctagtgtctggtgatgaagcggttgccgcggatgcggatgaagaggcg
gaagctgaatcgctgcgtcatatgaaacgttgtccaatttgcgaaacggcaatggactca
taccttatcgatgaaacgaaaaagctccatgtatgtggtaataaccccgcgtgtaagggc
tatgtcattgaaacaggtgcatttaagatcaaaggctacgatggaccactaattgagtgt
gacaagtgtggctcggatatgcagcttaaatcaggccgttttggtaagtattttggttgt
acaaatgaagactgtaaaaatacacgtaagctattgaaaaacggtgaagccgcaccaccg
aaagaagatccagttccgcttccggaactagaatgcgaaaagtcggatgcgcattttgtg
cttcgagatggcgcttcaggtattttcttagcggcgcacacattcccgaaatcacgtgag
acaagagccccgaaagtatcagagctaaaacgcttcagagatagaatttcacctaaattc
tattatctggctgatgcgcctgagcaagactcagatggtaaccctgcgattgttcgctac
tctagaaaaaccaagacacaatatgtgatgacagaagtggatggtaaagcgacgggttgg
aaagcgacatatagcaatggtaaatgggtagaagaagagaaaactaccaagaaaaagaaa
gcttaa
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