Pseudoalteromonas maricaloris DSM 15914: R5H13_11475
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Entry
R5H13_11475 CDS
T09524
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pmaz
Pseudoalteromonas maricaloris DSM 15914
Pathway
pmaz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
R5H13_11475 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmaz03400
]
R5H13_11475 (recD)
Enzymes [BR:
pmaz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
R5H13_11475 (recD)
DNA repair and recombination proteins [BR:
pmaz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
R5H13_11475 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
SH3_13
NAT10_TcmA_helicase
Viral_helicase1
AAA_22
RecD_N
UvrD-helicase
SLFN-g3_helicase
AAA_16
nSTAND3
UvrD_C
AAA_28
NTPase_1
CbiA
TrwB_AAD_bind
DEAD
T2SSE
AAA_24
SRP54
Motif
Other DBs
NCBI-ProteinID:
WOX27290
UniProt:
A0A8I2KNK7
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All DBs
Position
1:complement(2620551..2622428)
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AA seq
625 aa
AA seq
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MSQLSMDFEAFDHHSFITLLLEYKRVGKADIALAKLLNQQGYDDHFYVFLLLLIAHGRQH
SCLELDSINYQDPFELSYAVADRSVELSPFSSTGIAFAALAQHPAIGEDKPLRLYGNKLY
LARLANYEARLAGHFEMLAKADVTLDEAKLSALLASFFPASEEDIDWQKVACTLAIIKRF
CVITGGPGTGKTTTVTKLLAILQSLYNSAPLTIKLVAPTGKAAARLSESIIGAKARLNLP
PALADLLPEQAQTIHRLLGVIPNSVHYRHNQDNPLHVDVLIVDEASMVDLSLMAKLVDAL
PKHARLILLGDKDQLASVDTGNVLSDLCENLVLGQAPHYSQALKAKLAELSKQNLPESGD
TSADFMLEDNLAFLQKSHRFDSRSGIGQLAFAVNSNNKRQLDSVLGQGYSDIQHHELNSE
TYNALIARAAEQYQRYLLAIHHGESEAIIHSEFASYQLLVAVREGPYGVNELNRRIELKL
SQMGLVQPTGRFYVGMPIMITQNDYQLKLFNGDIGIILSDEQGELQASFIDEQGCVRRFY
PARLPSFDRVYVMTIHKSQGSEFAYTAMILPPIQRAQQGINRQLIYTGITRAKQQFELVA
QYKVLVQGMNRSVSRSSGLRSRLSN
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagccagttgagtatggactttgaggcatttgaccatcatagctttataacgttattg
cttgaatataaacgagttggtaaagccgatatcgcgttagctaagttgctgaatcagcaa
ggctacgacgatcacttctatgtatttttactattattaatcgctcatggtcgtcagcat
agttgtttagagttagacagtattaattaccaggatccgtttgagctcagctacgcggtt
gcggatcgatctgtagagttgtcgccattttcaagcacaggtatagcctttgctgcgctc
gcacagcatcctgcgatcggtgaagataagccgcttcggctatacggtaataagctctac
ttggcgagattagcaaattatgaagcaaggcttgcgggacactttgaaatgttggcaaaa
gccgatgttacgctggacgaagcaaaactgagtgcactgttggcgtcgttttttccagcc
agtgaagaagacattgattggcaaaaagtggcttgtacacttgctatcattaagcgattt
tgtgtcatcacgggcggccccggtacgggaaaaaccacgacggtcacaaaactgcttgcg
attttgcaatcgctttataacagtgcgccgttgaccatcaagctagtagcgccgaccggc
aaagcggctgcgaggctcagtgagtcaattatcggtgcgaaagcgaggttaaatctgccg
ccagcgcttgctgatttactgccggagcaggcgcaaactattcatcgcttgttaggcgtt
attcctaatagcgtgcactatcgtcacaatcaagataacccgctgcatgttgatgtgctg
attgttgacgaagcatccatggtggacttatcgcttatggcaaaactggtggatgcatta
ccaaaacatgcacggcttattttgctcggcgataaagatcagctcgcatcggtagacacc
ggtaacgtactcagcgacttatgtgaaaacttagtgcttgggcaagcaccacattacagt
caggcactgaaagcaaaactagctgagttgagtaaacaaaacttgcctgagtcgggtgat
accagcgctgactttatgttggaagataatctggcgtttttacaaaaaagtcaccgtttt
gacagtcgaagtgggattggtcagttagcatttgccgtaaatagtaacaataagcggcaa
ttagacagcgtgctggggcaaggttatagcgatatacagcatcatgaattaaatagtgaa
acctacaatgccctaattgctagagcggcggagcaataccaacgatacctgcttgccatt
catcatggtgagagtgaggccataattcatagcgagtttgccagttatcaattgcttgtg
gccgtgagagaaggcccttacggtgtgaacgagttaaatcgcagaatagagcttaagctt
agtcaaatgggattagtgcaaccgacagggcgcttttacgttggtatgcccattatgatc
acccaaaacgattatcagttgaaactgtttaacggtgatatcgggatcattttaagcgat
gaacagggtgaactacaggcatcatttattgatgaacagggctgcgttaggcgcttttat
cctgcaagattgccgagctttgatagagtgtacgtgatgactatccataaatcacaaggc
tctgagtttgcttacacggcaatgatactaccaccaattcaacgtgcgcagcaggggata
aatcgccagcttatttatactgggatcacccgagctaaacagcagtttgagttggtggca
caatataaagtattagtgcagggtatgaatcgaagtgtcagtcgcagtagtggtttgcga
agtcggttatcaaattga
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