Pseudoalteromonas maricaloris DSM 15914: R5H13_13145
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Entry
R5H13_13145 CDS
T09524
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmaz
Pseudoalteromonas maricaloris DSM 15914
Pathway
pmaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R5H13_13145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaz03019
]
R5H13_13145
03009 Ribosome biogenesis [BR:
pmaz03009
]
R5H13_13145
Enzymes [BR:
pmaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R5H13_13145
Messenger RNA biogenesis [BR:
pmaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R5H13_13145
Ribosome biogenesis [BR:
pmaz03009
]
Prokaryotic type
rRNA helicases
R5H13_13145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
P-loop_SecA
AAA_22
PMC2NT
Motif
Other DBs
NCBI-ProteinID:
WOX27596
LinkDB
All DBs
Position
1:2959517..2961340
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AA seq
607 aa
AA seq
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MSEPVTFESLDLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNQVDASVKQPQILVLTPTRELAIQVAEAFQQYAKFTKGVEVLALYGGQSYGIQLSA
LRRGAQIIVATPGRLIDHINRKTIDLSGLNALVLDEADEMLRMGFIDDVESIMEKTPEEK
QTCLFSATMPKQIQSICNKYLDNAEQVKITPRNSTVSTIEQVYWRATAHKNKAIVRFLEA
EDYDGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGLLDIVIAT
DVAARGLDVERLSLVVNYDIPQDCEAYVHRIGRTGRAGRQGKAILFVKNNERYLLKNIMR
HTRSDIAQVELPSAKVVEEKRIGALETKISTALEHKDIEFFSKVASGLAQKLELSQEDLA
AALLCLAQQQTPLKVEDIQIQQRERRERDDRRGERRERDGSRGERGERGERKSRSRDRAS
GPMDTYRIEVGRDHGVQVKNIVGAIANEADISSKFIGEIRLFNEHSTVQLPQNMPSDVLS
HFKSVHICQRPMNMTKSTHPADQGQGRGEEQRDRKRSFKDPRSGGGDKRRPEGQRREKRE
RKEISFS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagttacgtttgaatctttagacctttctcctgcaatcttaaaagcagtc
gaagagctgggatataaaacaccttctgagatccaagctcaatgtataccgttattgcta
gaaagaaaagacgtactgggactagcgcagacgggtacaggtaaaacggcagcatttgca
ctgccattgttaaaccaagtagacgcatccgttaaacaaccgcaaattcttgtgcttacg
ccaacgcgtgagctagctattcaagttgctgaagcatttcagcaatatgctaaatttact
aaaggcgttgaagtactagcgctttatggtggtcaaagctacggcattcagctaagtgct
ctacgccgtggtgcccaaattattgtggcaacaccaggtcgtttgattgaccacatcaat
cgcaagacgattgacctttctggtctaaacgcacttgtacttgatgaagcagatgaaatg
ctacgcatgggctttatcgatgatgttgaaagcatcatggagaaaacaccggaagagaag
caaacttgtttgttctctgcgactatgccaaagcagatccaatcaatctgtaataaatat
ttagataacgctgaacaagttaaaatcactccgcgtaactctacagtatctacgatcgag
caagtttactggcgtgcaactgcacacaaaaacaaagctatcgtacgtttcttagaagcg
gaagattacgacggtgctatcgtgttcgtacgtacacgtaatgacactgttcagcttgca
gagctactagagcgtgaaggcttctcagctgcaccgctcaacggcgacatgaaccagcag
gcgcgtgagcgcacagtagaccgtctaaagagcggcttactagatatcgttatcgcaact
gacgtcgcggcacgtggtcttgacgtagagcgtctaagccttgttgttaactacgatatc
ccacaagactgtgaagcttatgttcaccgtattggtcgtaccggccgtgctggtcgtcaa
ggtaaagcaatcttgttcgttaagaacaacgaacgttatttacttaagaacatcatgcgc
catacgcgctctgatattgcacaggttgaattaccaagtgcgaaagtcgttgaagaaaag
cgtattggtgcattagagaccaagatctctacagcgcttgagcacaaagacattgagttc
ttctcaaaagtggcatcaggccttgcacaaaagctagagctgagccaagaagacttagca
gcagcgctattgtgtcttgcacagcagcaaacgccgctgaaagttgaagatattcaaatt
caacagcgtgagcgtagagaacgtgacgaccgtcgtggcgagcgtcgcgaaagagatggt
agccgtggtgaacgtggcgagcgtggtgaacgcaaatctcgtagccgtgaccgtgcatca
ggtccaatggatacttaccgtatcgaagtgggtcgtgatcatggtgttcaagttaagaac
atcgttggtgctatcgcaaacgaagcggatatctcaagcaagttcatcggtgaaatccgt
ctgttcaatgaacacagcacggttcaattgccacagaatatgccaagtgatgtacttagc
cacttcaagagcgttcacatctgtcaacgccctatgaacatgactaagagcactcaccct
gccgaccaaggtcagggcagaggcgaagagcaaagagaccgtaagcgtagctttaaagac
ccacgtagtggcggtggcgataaacgccgtcctgaaggtcaaagaagagaaaaacgcgaa
agaaaagaaattagcttttcttaa
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