Pseudoalteromonas maricaloris DSM 15914: R5H13_14020
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Entry
R5H13_14020 CDS
T09524
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
pmaz
Pseudoalteromonas maricaloris DSM 15914
Pathway
pmaz03030
DNA replication
pmaz03430
Mismatch repair
pmaz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R5H13_14020 (holA)
03430 Mismatch repair
R5H13_14020 (holA)
03440 Homologous recombination
R5H13_14020 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmaz03032
]
R5H13_14020 (holA)
03400 DNA repair and recombination proteins [BR:
pmaz03400
]
R5H13_14020 (holA)
Enzymes [BR:
pmaz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
R5H13_14020 (holA)
DNA replication proteins [BR:
pmaz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
R5H13_14020 (holA)
DNA repair and recombination proteins [BR:
pmaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
R5H13_14020 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
DNA_pol3_delt_C
DnaJ-X
Motif
Other DBs
NCBI-ProteinID:
WOX27759
LinkDB
All DBs
Position
1:3153776..3154819
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AA seq
347 aa
AA seq
DB search
MRCYANQLSNYLSKGLAPFYLVFGEEPFQQGECALAIRTAAKQQGFDEVIKFALLPGFDW
QELSAQYNSMSLFSARTLIEFDFNEQKVPTQGVAVLKSLAEQVNPDVVVIFKGLGAGQDI
QRTAWFKALEPKGLFVPCYALTGRHLERWFDDECKRLKLSVSPQGKRALLVATEGNLLAT
HQELEKLSLLFGKNPVDEQQLLSGLLNQSKFDIFDLNTGLLSGNPKQIIKVLNKLASDNV
EPASILWTLQNQARTLLGVKTLWQTGTTLADAYKKHNVWKNQQTITQQALDRLTLEQMKQ
LLCMMADFDTAYKEARLTAPYQALAHIALAFATPIAMPLPISQSEHV
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgcgctgttatgccaatcaactctccaattacctaagtaaagggcttgcacctttttat
ctggtctttggtgaagaaccctttcagcaaggcgaatgtgcacttgccatacgaaccgca
gccaagcagcaaggctttgacgaagtcattaaatttgctctacttccgggatttgactgg
caagagctcagtgcgcagtacaacagtatgtctttgttcagtgcgcgtacgctcattgag
ttcgactttaacgagcaaaaagttcctacccaaggtgtcgcggttttaaagtctttggcc
gaacaggtcaatccagatgtcgttgttatttttaaagggctgggcgcgggtcaagacatt
caacgcactgcttggttcaaagcattagagcctaaaggcctgtttgtcccttgctatgcg
ttaacggggcgtcatcttgaacgctggtttgatgatgaatgtaagcggctgaaattgtct
gtgtcaccacaaggcaagcgtgccctgctcgtcgccacagaaggcaacttgcttgcaacg
catcaggagctcgaaaagctttccttactatttggtaaaaacccggttgatgaacagcaa
ttgctgagcggcttattaaatcaatctaagttcgatatttttgatttaaataccggattg
ctaagtggtaaccctaaacaaatcatcaaagtattgaacaagctcgccagcgataatgta
gagcccgcgagtattctctggaccttgcaaaaccaagcacgcaccctgctgggtgttaaa
accttgtggcaaaccggcactacgcttgcagatgcctataaaaagcataatgtctggaaa
aatcagcaaaccatcacgcagcaagcgttagacagattaacgctagagcagatgaaacag
ttgctctgtatgatggcagactttgataccgcatataaagaagcaaggctcactgcgcca
tatcaagctctagcacacatcgcgctggcctttgccacccccatcgcaatgccgttacca
attagccagagtgagcatgtatga
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