Pseudoalteromonas maricaloris DSM 15914: R5H13_16150
Help
Entry
R5H13_16150 CDS
T09524
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pmaz
Pseudoalteromonas maricaloris DSM 15914
Pathway
pmaz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pmaz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
R5H13_16150 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmaz03021
]
R5H13_16150 (rpoD)
Transcription machinery [BR:
pmaz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
R5H13_16150 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
WOX28142
LinkDB
All DBs
Position
1:3606264..3608114
Genome browser
AA seq
616 aa
AA seq
DB search
MDQSPQSQLKLLIQKGKEQGYLTFAEVNDHLPQDIIDSDQVEDIISMINDMGIQVSENAP
DADELMMQETTTDEDAAEAAAAALATVEKEIGRTTDPVRMYMREMGTVELLTREGEIQIA
KRIEEGINQVQISVAEYPEAITYLLEQWDKYEAEEMRLSDIVSGFFDPNAIEEDEAPISA
THIGSELSDEDLDDEDDDEDDDDDDSEEGDSGPDPEEAREHFEQLRTLYNKAREIFESKG
RSHPDAKAAIQEIGDHFRTFKLVPKQFDRMVNNMRDMMDKVRVQERIIMKQAVQIAKVPK
KVFVKHFANNETDTAWIDAEIASGEKHSAKLAEVKPEIERCVNKLKAFEDSTGLSIERIK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPS
PEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIESPIDSATMES
LRGATNEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSDLLKSFLDVKG
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggatcaatctcctcagtcacaactcaaacttctgattcagaaaggtaaagagcaaggt
tatttaacttttgcagaagttaacgatcatcttccacaagacatcatagactcagatcag
gtagaagatatcatcagcatgatcaacgatatgggtattcaggtctctgaaaatgcgcct
gatgctgatgagttgatgatgcaagaaacaacaacagatgaggatgctgcagaagcagcg
gctgcggctttagcaacagtagaaaaagaaattggccgcacaactgaccctgttcgtatg
tatatgcgtgaaatgggtacggtagaacttctaactcgtgaaggcgaaatccaaatcgct
aagcgtattgaagaagggatcaaccaagtacagatttctgttgcagaataccctgaagct
attacttacctgctagagcaatgggacaagtacgaagcggaagaaatgcgcctaagcgac
attgtttctggtttctttgatcctaatgctatcgaggaagacgaagcaccaatttcagca
acacacatcggttctgagctaagtgatgaagacttagatgacgaagatgatgatgaagat
gatgacgatgatgactcagaagaaggcgattcaggtccagatcctgaagaagctcgtgag
cattttgaacaacttcgtacgctgtacaataaagcgcgagaaatttttgaaagtaaaggt
cgctcgcacccagatgcgaaagctgcaattcaggaaatcggcgatcacttccgtactttc
aagttagttcctaagcaattcgaccgcatggtaaataacatgcgcgacatgatggataaa
gtgcgtgttcaagaacgcatcatcatgaagcaagcagttcagattgctaaggttccaaaa
aaggttttcgttaagcactttgctaacaatgaaaccgataccgcatggatcgatgctgaa
attgcatcaggtgaaaaacactcagcaaaacttgctgaagtaaaacctgaaatcgagcgt
tgtgttaacaagcttaaagcgtttgaagatagcacaggtcttagcattgagcgtattaaa
gacatcaaccgtcgtatgagtattggtgaagcaaaagctcgccgtgcgaagaaagaaatg
gttgaagcgaacttacgtcttgtaatttcaatcgctaaaaagtataccaaccgtggtctg
cagttcttggatctgatccaagaaggtaacatcggtctgatgaaagcggttgataaattt
gaataccgtcgtggttataagttttcaacatacgcaacttggtggatccgtcaggcgatc
acgcgctcaattgcggatcaggcaagaactatccgtattccagtgcatatgattgaaaca
atcaacaagctaaatcgtatctctcgtcaaatgctacaggaaatgggccgtgagccaagt
cctgaagaattggcagaacgtatgatgatgcctgaagacaagatccgcaaagtgttaaaa
atcgccaaagagccgatctcaatggagacgccaattggtgatgatgaagattcacatctt
ggtgactttatcgaagacactactatcgagtcgccgattgattcagcaacgatggaaagt
cttcgtggcgcgaccaacgaggtacttgcaggtcttaccgctcgtgaagctaaagtacta
cgtatgcgttttggtatcgatatgaatacagaccacacgttagaagaagtgggtaaacag
tttgatgtaacacgtgagcgtattcgtcagattgaagctaaagcgctacgtaagctgcgc
cacccttctcgctcagatctattaaagagctttttagacgttaagggctaa
DBGET
integrated database retrieval system
