Pseudoalteromonas maricaloris DSM 15914: R5H13_21100
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Entry
R5H13_21100 CDS
T09524
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pmaz
Pseudoalteromonas maricaloris DSM 15914
Brite
KEGG Orthology (KO) [BR:
pmaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmaz03016
]
R5H13_21100 (rnd)
Enzymes [BR:
pmaz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
R5H13_21100 (rnd)
Transfer RNA biogenesis [BR:
pmaz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
R5H13_21100 (rnd)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DNA_pol_A_exoN
Motif
Other DBs
NCBI-ProteinID:
WOX31440
LinkDB
All DBs
Position
2:complement(465369..466499)
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AA seq
376 aa
AA seq
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MQYQVIESQTALDEFVLSISKAKVLAVDTEFMRRRTLYPEIALLQIFDGNHLALIDPLAD
MDFSRLWTLFSDTSVLKVLHSPSEDIEVFLKFAGFIPSPIFDTQFALQLLGEGSCIGFAN
MVKQLRDVDIDKSESRTDWLRRPLTQSQLDYAASDVYHLLPCFETIQARVNEKQLFNIVL
QESELLAQKRSFRQPDEVLYLDVKNVWQLKPRDLATLKELAAWRRAKAEKKNLALNFVLK
EHNMVEIAKRRPSSLGSLRNVPGVEPMEVNRSGKEILACIEKAKEVSEQDCPQRVRRLID
FKGYKAACKDIKQVIAEVAKTNDIPVDVFASKKQINQVISWSWKKSPEEKQLLMKPDLAL
GWRAELVADKLDSWWQ
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
gtgcagtatcaagttattgaaagccaaacagcactagatgaatttgtattgtctatttcg
aaagccaaagtgctcgccgtcgacaccgaattcatgcgtcgtcgcaccctatacccagaa
attgctctgttacagatctttgatggtaaccaccttgcccttatcgatccactagccgat
atggattttagtaggctgtggacactgttttcagatactagtgttttaaaagtacttcat
tctccatcagaagatatcgaagtatttctaaagtttgcaggctttatcccgtcaccaata
ttcgatacccagtttgctttacagttgttaggtgagggtagttgtattggttttgctaat
atggtgaagcaacttagagacgtagacattgacaaaagtgaatccagaacagattggtta
cgccgccctttaactcaaagccaattagattacgccgcctccgatgtatatcatttactg
ccatgttttgagactattcaagcgcgagtaaatgaaaagcagctatttaacatagtgctt
caagagagtgagttgctcgcccaaaagagaagcttccgtcaaccagatgaagtactttat
cttgatgtcaaaaacgtgtggcagcttaagcctagagatcttgctactctaaaagagctt
gcagcgtggcgcagagccaaggcagagaaaaagaacttagcgctaaattttgtgcttaaa
gaacataacatggtcgaaatcgccaaacgtcgtccaagctcactgggcagtttacgtaat
gttccaggtgttgagccaatggaagttaatcgctctggtaaagaaattctcgcctgtata
gaaaaagcaaaagaagtaagtgaacaagattgtccacaacgcgtgagaaggcttatcgac
tttaaaggttacaaagcagcgtgcaaggatattaaacaggttatcgccgaagtcgccaaa
actaacgatattccggttgatgtgtttgcttcgaaaaaacaaatcaaccaggtgatcagc
tggtcgtggaaaaagtcaccggaagaaaagcaattgctgatgaaacccgatcttgcgtta
ggctggagggctgagcttgttgcagataagttagacagttggtggcagtag
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