Prochlorococcus marinus AS9601: A9601_10301
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Entry
A9601_10301 CDS
T00464
Symbol
mfd
Name
(GenBank) Transcriptional-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmb
Prochlorococcus marinus AS9601
Pathway
pmb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A9601_10301 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmb03400
]
A9601_10301 (mfd)
Enzymes [BR:
pmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A9601_10301 (mfd)
DNA repair and recombination proteins [BR:
pmb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A9601_10301 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
ResIII
CarD_TRCF_RID
Cas3-like_C_2
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABM70314
UniProt:
A2BRA3
LinkDB
All DBs
Position
890248..893760
Genome browser
AA seq
1170 aa
AA seq
DB search
MSLNTLVDYISNSQITSELVKRISKNNELNIVGSSRYAKSIILDSIAKKEKKNILLICPN
VEIAYKWIGYFESINDKAVLYYPPKEHLPYSSINKSKEIEFSQLTVLSKLIKKEKNELNI
VISTERSLQPHLINKNLLIENKLNLQKGVQIEIQELANKLSLLGYTKDNVTSTEGFWSRR
GEIIDIYPVNNEFPIRLEFFDNVIEKIREYDPHTQKTLESINNIEIIQAGFNLLIKDKLN
NFSKNGIFNSEDINKNNLDRYLGIIEKTPSNIIDFIDRETILVIDELEDCTKFANNWYQD
SESNFDNCEYELNENLKNNDINLQAKPNLHLKFDEILNSLGNFNLIKFYEFESKTNIDNK
FLLNDKRINSYSKNIGKLSNDINKNIKNNEKVWILSAQPLRTRTLLFEHECNTNFLNNPN
DIDEAFKSINNSTPLILKNKNNYEIEGFYLPIWKVVLITDKELFSQQSLFHNVFIRRKKR
SVNSNINVNKISPGDFIVHKNHGIGKFLKIEKINITGDSRDYLVIQYQDGKISVAADQLG
SVNRYRSSGKIKPKINKLGGTEWERIKDKNKKQIKKVAVDILKLYAKREKLKGYIYPEDG
PWQDELEESFPYQPTPDQITAVEEIKSDMESEKPMDRLVCGDVGFGKTEVAVRAIFKAIT
SGKQVILLAPTTILAQQHWRTISNRFSPYPIKVSLLNRFKTVNERKEIYAGLKNNKIDLV
VATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKTSIDVLTLSATPIPRTLYMSL
SGLRQMSLLNTPPPSRRSIKTYLAEIDMDVIRTAINQELDRGGQIFYVLPRISDINQALN
KLKNIFPSLKFIVAHGQMNETELENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIED
SHKFGLSQLYQLRGRVGRSSVQAHAWLFYPDINKINDAAKQRLKAIKDFSELGSGYQLAM
KDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEVNDTQIDLPINAFI
PATWILNREEKLEAYKSATECSKNDELTELATDWVNRYGNLPKPVESLIMIMRLKLLAKK
CGFSKIKLKKPNILIETKLKNSTFKILKNSLASSVQNKFNFNEGEQLSIITIRGLGATEI
QNQIDQLMLWFESFEREIKNFDKELLMKKE
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaaatactttagttgattatatttcgaactcacaaattacttctgaattagta
aaaagaatttcaaaaaataatgaattaaatattgttggttcaagtagatatgctaaatca
ataatcttagatagcatcgcaaaaaaagagaaaaaaaatatattattaatttgtcctaat
gtagaaattgcctacaaatggattggttattttgaaagtataaatgataaagcagtttta
tattatcctccaaaagaacatctaccatactcatcaattaataaatccaaagagattgaa
tttagtcagcttactgttttatccaaattaataaaaaaagagaaaaatgaacttaatatt
gttatatcaacagagagatcactacaacctcatctaataaataaaaacttattaattgaa
aataagttgaatttacaaaaaggggttcaaatcgagattcaagaattagcaaataaactt
tctttacttggttatacgaaggataatgtaacttcaacagagggattctggagtaggaga
ggggaaataatagatatttatcccgtcaataatgagtttcctataagattagaatttttt
gataatgtaattgagaagataagagaatatgatccccatacacaaaaaacattagaaagt
attaataatattgaaataatacaggctggatttaatttgctaattaaagataagttaaat
aatttttctaagaacggtatttttaattcagaagatataaataaaaataatcttgatcgg
tatttaggaataattgaaaaaaccccctcaaatataatagattttattgatagggaaaca
attctcgtaattgatgaattagaagattgtactaaatttgcaaataattggtatcaagat
tcagaaagtaattttgataattgtgagtatgaattaaatgagaaccttaaaaataatgat
attaatttacaggccaaacctaatttacatttaaagtttgacgaaatattaaattcacta
ggaaattttaatttgataaaattttatgaatttgaatctaaaaccaatattgataataag
tttttgttaaatgataaaagaataaattcatactctaaaaatataggaaaattatccaat
gatataaataaaaatataaaaaataatgagaaagtatggatattatcagcacagccattg
aggactaggactttactttttgagcacgaatgtaatacaaatttcttaaacaatcctaat
gatattgatgaagcatttaagtcaattaataattcaactcctttaattttaaaaaataag
aacaattatgaaatcgagggtttttatcttccaatttggaaagttgtcctaataacagat
aaagaattattttcacaacaatctctttttcataatgtattcataagaagaaaaaaaaga
agtgtaaattcaaatataaacgtaaacaagattagtcccggtgattttatagttcataaa
aatcatggaataggaaaatttttaaaaatagaaaaaataaatataactggagattcaaga
gattatttagtcattcagtatcaggatgggaagataagtgttgccgctgatcaacttggt
agtgttaacagatatagatcaagtggaaaaataaagccaaaaataaataaattaggaggg
acggaatgggaaagaataaaagacaaaaataagaaacaaatcaaaaaagttgctgtcgat
attttaaaactttatgcaaagagagagaaattaaagggttacatttacccagaagatggt
ccttggcaagatgaattagaggaatcattcccttatcaaccaacacctgatcaaattact
gctgtagaagaaataaaatctgatatggaaagcgaaaagccaatggacaggctagtttgt
ggagatgtaggatttggcaaaacagaagtcgctgttcgggctatttttaaggctattaca
tcaggcaaacaggtaatattacttgctcccacaacaatcctagctcagcaacattggaga
acaataagcaatagattttcaccttacccaataaaagtatcattactcaatagattcaaa
accgttaatgaaagaaaggaaatctatgctggtttgaaaaataacaaaattgatttagtt
gtagcaacgcaccaaattttaggaaaggaaatagagataaaaaacttaggactacttgta
attgatgaagaacaaagatttggagtaaggcaaaaggagaaaattaaaaaaatcaaaaca
agcatagacgtattaactctatcggcaactccaattccaagaactctttatatgagttta
tctggactaagacaaatgagcttactaaatactcctcctccatcaagaagatcaataaaa
acctatttagctgaaatagatatggatgttataagaactgccattaatcaagaacttgat
aggggaggtcaaattttttatgttcttccaagaatttctgatattaatcaagctttaaat
aaattaaaaaatatttttccaagcttaaaatttattgttgctcatgggcaaatgaacgaa
acagagcttgaaaatgcaatgattgcttttaataatggagaagtagatcttatgatatgc
acaacaataattgaaagtggattagacatacctaaagtaaatacaatcattattgaagat
tctcacaaatttggcctttcacaactttatcaacttagaggaagagttggtagaagcagt
gtacaagcacatgcttggttgttttatccagatataaataaaattaatgacgctgcaaaa
caaagattgaaagctataaaagatttttcagaactaggaagtggttaccaacttgcaatg
aaagatatggaaataagaggtgttggtagtttattaggagaagaacaaagtggaaaggtt
aatgctattggatatgatttatatatagaaatgctccatgaggctatttcagaaatcagt
gggcaagagatacctgaagttaacgatactcaaattgatttaccaataaatgcttttata
cctgcaacatggatattaaacagagaagagaagcttgaggcttacaaatctgctactgaa
tgttcaaaaaatgatgaattaactgaattagctacagactgggtaaatagatatggaaac
ttacccaaacctgttgagtccttaattatgataatgagactaaaattactagctaaaaaa
tgtggttttagtaagatcaagctcaaaaagccaaacatcttgatagagacaaaattaaaa
aattctacttttaaaattcttaaaaattctttggcaagtagtgttcaaaataaatttaat
tttaatgaaggcgaacaattatcaatcatcactataaggggtttaggtgcaactgaaatt
caaaatcaaattgatcaacttatgttgtggttcgaatcttttgaaagagaaataaagaat
ttcgataaagaacttcttatgaaaaaagaataa
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