Prochlorococcus marinus AS9601: A9601_12071
Help
Entry
A9601_12071 CDS
T00464
Symbol
srmB
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmb
Prochlorococcus marinus AS9601
Pathway
pmb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9601_12071 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmb03019
]
A9601_12071 (srmB)
03009 Ribosome biogenesis [BR:
pmb03009
]
A9601_12071 (srmB)
Enzymes [BR:
pmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A9601_12071 (srmB)
Messenger RNA biogenesis [BR:
pmb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A9601_12071 (srmB)
Ribosome biogenesis [BR:
pmb03009
]
Prokaryotic type
rRNA helicases
A9601_12071 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
AAA_22
Cas3-like_C_2
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABM70491
UniProt:
A2BRT0
LinkDB
All DBs
Position
complement(1022636..1024417)
Genome browser
AA seq
593 aa
AA seq
DB search
MAFKKDSNSLGSEQENFHNEDSPLLESKNLENKKEIESQLLEVSKENDNENGFLDFGFNQ
SILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLTDNKELN
AKVLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRKVDVVVGTPG
RIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSATMPSEI
RNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNNEGVIIFVRTK
LLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAARGLDVERIK
LVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRTKIEEINIPS
NKIINEKRMEKLIDNVNESFLAKDENEENKALIIDVLDNLKEKYSMDESNIAMAAINLVI
GNKSFFVDEDDSWINKQNNTDRNRSNRNSNNRMRNSNRRNNYQNDSFETYKFNFGKFDGV
RVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPRDLHRETKNKLKKIKLRN
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggcttttaaaaaagatagtaactctcttggtagtgagcaggagaattttcataatgaa
gattctcccctactagagtctaagaacttagaaaacaaaaaagaaattgaatctcaatta
ttggaagtatcgaaagaaaatgataatgagaatggatttctcgattttgggtttaatcaa
tcaatcttaaactcgttaataaataaaggatataaaaatccaactcccatccaaaaagct
gcaattcccgaactaatgttaggtagggatttactgggccaagcacaaacaggaacagga
aagactgcagctttcgcattaccattaatagaaaaacttacagataataaagaattaaat
gccaaggttttagttatgactcctacaagagaattagcaactcaagtggcagaatctttt
aaaagttatagttctgaatctagtaattttaagacggttgcaatatatggaggcaccgac
tatcgaaatcaaatttctgcattgaaaagaaaagttgacgtagtagttggtacaccaggc
cgaataatggatcatataagacaggggacttttaaaattaaagatataaattgtcttgtt
ttagatgaggcagatgaaatgttaaatatgggttttcttgaggatattgaatggataata
gatcaacttccggaaaataagcaaatggtattgttttcagcaacaatgcctagtgagata
agaaatatagcaaaaaaatatctaaatgatcccgccgaaatattaatcaaaagtgtcaaa
aaagaaactcaattaatttcgcaaaaatttctatatgtacaaaggcatcataagttagat
gctttaaaaagaatactagaacttaataacgagggagtaattatttttgtgaggacaaaa
ctacttactacttcaatagctgaagctttagagaattcaggccatactgtggcagtactt
aatggagatatacctcaaaatcaaagagaaaatactgtagatagattgaaaaaaggattt
attaatatccttgttgcaactgatgtcgcagctagaggattagatgttgagaggataaaa
cttgttgttaattacgattttccttttgacaaggaaacatatactcatagaattggaaga
actggaagggcaggcagatctggagaagcaattttatttgttaatcaaagagaaaaacat
tttctaagaaacttagaaaactcaacaagaacaaagattgaagaaattaacataccaagt
aataaaataataaatgaaaaaaggatggagaaacttatagataatgttaatgagagtttt
ttagctaaagatgaaaatgaagaaaataaagctttgattattgatgtactagataattta
aaagaaaaatactctatggatgaatcaaatattgcaatggcggcgattaatttagtaata
ggtaataaatcattttttgttgatgaagatgattcttggattaataaacaaaataatact
gatcgaaatagatcaaatagaaatagtaataatcgtatgagaaattcaaatagaagaaat
aattatcaaaatgattcttttgaaacctataaatttaactttggtaaatttgatggagtt
agagttgcaaatattatatcctcaatctgtaattcaactaatataaatggtagatccata
ggtaagatacagatttttaatgattacagtttggtagatttacccagagatctgcataga
gaaactaaaaataaattaaaaaaaattaaactcagaaactag
DBGET
integrated database retrieval system
