Prochlorococcus marinus MIT 9515: P9515_11921
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Entry
P9515_11921 CDS
T00465
Symbol
srmB
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmc
Prochlorococcus marinus MIT 9515
Pathway
pmc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P9515_11921 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmc03019
]
P9515_11921 (srmB)
03009 Ribosome biogenesis [BR:
pmc03009
]
P9515_11921 (srmB)
Enzymes [BR:
pmc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P9515_11921 (srmB)
Messenger RNA biogenesis [BR:
pmc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P9515_11921 (srmB)
Ribosome biogenesis [BR:
pmc03009
]
Prokaryotic type
rRNA helicases
P9515_11921 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrD-helicase
AAA_19
Cas3-like_C_2
AAA_22
AAA_30
Flavi_DEAD
DeaD_dimer
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
ABM72399
UniProt:
A2BX88
LinkDB
All DBs
Position
complement(1047510..1049297)
Genome browser
AA seq
595 aa
AA seq
DB search
MASNKQKQLEEKDEDNFGEETSSKHDSKEIENNLKIISEDKLSAEKEDIEKGFACFGFNK
LILNSLENKGYKIPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPIIEKLENNKESN
AKVLVMTPTRELATQVADSFKSYSVESTNLRTLAIYGGTDFRNQISSLKRKTDVVVGTPG
RIMDHIRQGTFKINNINCLVLDEADEMLKMGFLEDIEWIIDKLPENKQMVLFSATMPNEI
RNIAKKYLNDPAEILIKSVKKETQLITQRYINVQRHHKLEALKRILEITNEGVIIFVRTK
LLTTSIAEALENSGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATDVAARGLDVERIK
LVINYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRNKIEEIEIPN
NKLINEKRMGKLISNLNEISLAQENNEEKKALMIDILDILREKYSMNESNIAMAAINLAI
GNKSFFLNEDESWIYKQNNSDRNRSNRNGSGNNRMRNINRRNNYQNDSFETYKFNFGKMD
RVRVSNIISSICNSTNINGRSIGKIQIFNEYSLVDLPKDLHGEVRNKLRKLRIRN
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaaataaacaaaaacaattggaagagaaagatgaagataattttggggaagaa
actagttctaaacacgattcaaaagaaatagaaaataatttgaaaattatttctgaagat
aaactttctgccgagaaggaagatattgaaaaagggtttgcttgctttgggtttaataaa
ttaatattaaattcattggaaaataaaggatataaaattcctacacctatacaaaaagcc
gcaattccagaattaatgcttggtagagatttgttaggtcaagctcaaactggtacaggg
aaaacggcagccttcgctctcccaataatagaaaagcttgaaaataacaaagaatcaaac
gctaaagttttggtgatgaccccaacaagggagttggctactcaagtagcagattctttc
aagagttatagtgttgaatcaaccaatttaaggactttagcaatatatggagggactgat
tttaggaatcaaatctcatcacttaagaggaagacagacgttgttgttggtacacctgga
agaataatggaccatattagacaaggcacattcaaaattaataatataaattgtctagtc
cttgatgaagctgacgaaatgttgaaaatgggatttcttgaagatattgaatggataata
gataaacttccagaaaacaaacaaatggtattgttctctgcaacaatgccaaatgagata
agaaacatagcaaaaaaatatcttaatgatccagctgagatacttattaaaagcgtaaag
aaagaaactcaattaattacccaaagatatattaatgttcaaagacaccataagttagaa
gctctaaaaagaatattagaaattactaatgaaggagtaataatatttgtgaggacaaaa
ttacttactacttctatagctgaagcattggaaaattcaggccatagtgtggctgtactt
aacggtgatattccacagaatcaaagagaaaatacagttgatagattaaaaaaaggattt
attgatattcttgtagccactgatgtggcagcgagaggactagatgttgaaaggattaaa
cttgttataaactacgatttccctttcgataaggaaacatatactcatagaattggaaga
acagggagagctggtagatctggagaagcaatcttatttgttaatcaaagagaaaaacat
tttctaaggaacttggaaaactctacaagaaataagatagaagaaattgagataccgaat
aataaattaattaacgaaaaaaggatggggaaattaatttcaaatttaaatgaaatttca
cttgctcaagaaaataacgaagaaaaaaaagctttgatgatcgatattcttgacatctta
agagaaaaatattctatgaatgaatcaaacattgcaatggcagctattaatttagcaata
ggaaataaatccttttttctaaatgaagatgaatcttggatttataaacaaaataattct
gatcgtaatagatctaatagaaatggaagtggaaataatcggatgagaaatataaataga
aggaataattatcaaaatgattcttttgaaacctataaatttaatttcggcaaaatggat
agagttagagtatcaaatataatttcttctatatgtaactctacaaatattaatggtaga
tctataggcaagatacaaatatttaatgaatatagtttggttgatttaccaaaagatttg
catggtgaagttaggaataaattgagaaaattaagaatcagaaattaa
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