Prochlorococcus marinus NATL1A: NATL1_14791
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Entry
NATL1_14791 CDS
T00467
Symbol
srmB
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pme
Prochlorococcus marinus NATL1A
Pathway
pme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NATL1_14791 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pme03019
]
NATL1_14791 (srmB)
03009 Ribosome biogenesis [BR:
pme03009
]
NATL1_14791 (srmB)
Enzymes [BR:
pme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NATL1_14791 (srmB)
Messenger RNA biogenesis [BR:
pme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NATL1_14791 (srmB)
Ribosome biogenesis [BR:
pme03009
]
Prokaryotic type
rRNA helicases
NATL1_14791 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
AAA_30
CMS1
AAA_19
Cas3-like_C_2
AAA_22
CTD3
Motif
Other DBs
NCBI-ProteinID:
ABM76036
UniProt:
A2C3H6
LinkDB
All DBs
Position
1189779..1191548
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AA seq
589 aa
AA seq
DB search
MTNKNPHEDSSCPVEQDVLEESTEEILEESEQNSENGFSEFNFSEELIQTISDKGYSSPT
PIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPILERLKKNVGHPQVLVLAPTRELAMQV
AESFRTYSAGHPHFKVLAIYGGSDFRNQINTLRRGVDVVVGTPGRVMDHMRQKTLNTSHL
SCLVLDEADEMLRMGFIDDVEWILEQLPEERQLVLFSATMPSEIRRLSKKYLNSPAEITI
KATELKERLIRQRYISVQNVYKVNALQRVLEAVSEEGVIIFARTKAITIVVAEKLESYGY
NVAVLNGDIPQNQRERTVERLRQGSINILVATDVAARGLDVDRIGLVINYDMPFDREAYV
HRIGRTGRAGRNGEAILFVNPRERSFLSNLERAVGQPIEKMDIPDNDLINNNRIKKLQAK
LIKAASTERDNPEEANILEELIKNVEKELDIDPKDLTLAALNLAVGFNALLENGNEDWIR
QSAQRNTRNDRRDNNKFKQRRRGDFDNNRLEDEMDRFRVEVGHRDRVKPGNLVGAIANEA
GLKGRSIGRIRIFENYSLVDLPKQMPDKVFQALKKVKVMNRELQINRAD
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgacaaataaaaatccacatgaggattcctcatgtccagtagaacaagatgttctcgag
gaatctactgaggaaatattagaggaaagtgagcaaaattcagaaaatggattttctgaa
tttaattttagtgaagaactaattcaaacaatctctgataaaggctactcatcacctact
ccgattcaaaaagctgcaattcctgaattgcttcttggtagagatttagttggacaagct
caaactggtacaggaaaaaccgccgcatttgctttaccaatactagaaaggttgaaaaag
aatgttggacatccacaagttttagttcttgctccaacccgcgagttggctatgcaagta
gctgaatcatttcgaacatattcggcaggtcatccgcattttaaagtgcttgcaatatat
ggaggctctgatttccgaaatcaaattaacactctcaggaggggagtcgatgtagtcgta
gggactccggggcgagtcatggatcacatgcgtcaaaagactctaaatactagtcatctg
agttgtttagttctagacgaggctgatgagatgttaaggatggggtttattgatgacgtt
gagtggattttagaacaattgccagaggagagacaactagttttattctcagcgacaatg
ccatctgagatcagaagattatcaaaaaaatatttaaatagccctgcagaaataactata
aaagcaactgaattgaaagaaaggcttataaggcaaaggtatataagcgttcaaaatgtt
tataaagttaatgcacttcaaagagtacttgaagctgtatcagaagaaggggtaataata
tttgctagaacaaaagccataacaatcgtagtagctgaaaaattagaatcatatggatat
aacgtagcagttttaaatggagatattcctcaaaatcaaagggaacgaactgttgaaaga
ttaagacaaggatctatcaatattttagtagctacagatgtcgcagcaagaggtcttgat
gtagatcgaattggtttagtaataaattacgatatgccatttgatcgcgaagcatatgtt
catagaattggcagaacaggtcgtgcaggaagaaatggtgaagcaattctttttgttaat
cctagagaaagatcatttttaagtaatcttgaaagagctgtaggtcagccaattgaaaaa
atggatattccagacaatgaccttataaacaataaccgaattaagaaattacaagcaaaa
ttaataaaagccgcctcaacagagagagacaacccagaagaggctaacattttagaagaa
ttaataaaaaatgttgaaaaagaattagatatagatccaaaagacttaacacttgccgca
ttaaatttggcagttggatttaacgcactccttgagaatggcaatgaggattggataaga
caatcagctcaaaggaatacaagaaatgatcgcagggacaataataaattcaagcaacgt
cgaagaggtgattttgataacaacagacttgaagatgaaatggacagattcagggttgaa
gttgggcaccgagatagagttaagcctggaaatctagttggggcaattgctaacgaggcc
ggactaaaagggagatcgataggaagaataagaatatttgaaaattacagcctagtagat
ctcccaaaacaaatgcctgataaagttttccaagctctaaagaaagtcaaagtaatgaat
agagagttacagataaatagagcagactaa
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