Polymorphobacter megasporae: KTC28_06525
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Entry
KTC28_06525 CDS
T08573
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
pmea
Polymorphobacter megasporae
Pathway
pmea03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pmea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KTC28_06525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmea03400
]
KTC28_06525
Enzymes [BR:
pmea01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
KTC28_06525
DNA repair and recombination proteins [BR:
pmea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
KTC28_06525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
UAJ11968
LinkDB
All DBs
Position
1398354..1399790
Genome browser
AA seq
478 aa
AA seq
DB search
MTAILVRPDDFDGWRAAARRLAVAGIPPGDVVWQVGDIATDLLGGDGLPVAETPMFNVPK
AFIEVAGRVICHRDPERFALLYTALTTLRTRPKLLDDAADPLVRRLYDLDKAVRRDVHKM
RAFVRFRDVPDPEGERFAAWFEPEHHIVRRNAGFFARRFANMRWSILTPDECVHWDGELS
FTPGATRADAPDGDALEETWRTYFASIFNPARLKVKAMTAEMPKKYWRNLPEASLVPGLI
AGAEERTRMMIDAGDKAGMTNAAVQAGAGAWVRTGDGSPADALAALRDDAAQCKRCLLFG
PATQTVFGEGPSDARLVFVGEQPGDSEDLAGRPFIGPAGQVFDRALAAAGIDRARTYVTN
AVKHFKFEQRGKRRIHSKPDISEINACRWWVEHERAAIRPAVTVALGASAARSLTGKTVT
ISKERGRPLTLADGTEAWITVHPSFLLRIEDKAAAALEFDRFVADLVAVRERLAALAG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
ctgaccgcgatcctcgttcggcccgacgatttcgacgggtggcgagcggcggcgcggcgg
ctcgcggtggcgggtatcccgccgggcgatgtcgtctggcaggtcggggatatcgcgacc
gatctgctcggcggcgatggtctgccggttgccgagacgccgatgttcaacgtgccgaaa
gcgttcatcgaggtcgctggccgggtgatctgccaccgcgaccccgaacgctttgccctg
ctttataccgcgctgacgacgctgcggacccggccgaaactgctcgacgatgccgctgat
ccgctggtccggcggctgtacgacctcgacaaggcggtccgccgcgacgtccacaagatg
cgcgccttcgtccgctttcgcgacgtccccgaccccgagggcgagcgcttcgcggcgtgg
ttcgaacccgagcatcacatcgtcaggcgcaatgccggcttcttcgcccggcgcttcgcc
aacatgcgctggtcgatcctgacccccgacgagtgcgtccactgggacggcgagctgtcc
ttcacccccggggcgacccgcgccgatgcccccgacggcgacgcgctcgaggagacgtgg
cggacctatttcgccagcatcttcaacccggcgcggctgaaggtgaaggcgatgaccgcc
gagatgccgaagaaatactggcgcaacctgcccgaggcgtcgctcgtcccggggctgatc
gccggggccgaggaaaggacacggatgatgatcgatgcgggcgacaaggcgggaatgacc
aacgccgcggtgcaggcaggggcgggagcgtgggtacggaccggcgacggcagcccggcc
gatgcactcgccgcgctccgtgacgacgcggcgcaatgcaagcgctgcctattgttcggc
ccggcgacgcagacggtgttcggcgaggggccgtccgacgcgcggctggttttcgtcggc
gagcagcccggcgacagcgaggatctcgccggtcgcccgttcatcggcccggcggggcag
gtcttcgaccgcgcgctcgccgccgcagggatcgaccgcgcgcggacctatgtcaccaac
gcggtcaagcacttcaagttcgagcagcgcggcaagcggcggatccattcgaagcccgac
atcagcgagatcaatgcctgccgctggtgggtcgagcacgagcgcgccgcgatccgtccg
gcggtgacggtcgcgctcggggcgagcgcggcgcggtcgctgaccggcaagacggtgacg
atctcgaaggagcgcggacggccgttgacgctcgccgacggcaccgaagcgtggatcacc
gtccacccgagcttcctgctgcggatcgaggacaaagccgcagcggcgctcgagttcgac
cgcttcgtcgccgatctggtcgcggtgcgggagcggctggcggcgctggcgggttaa
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