Polymorphobacter megasporae: KTC28_09075
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Entry
KTC28_09075 CDS
T08573
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pmea
Polymorphobacter megasporae
Brite
KEGG Orthology (KO) [BR:
pmea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmea03016
]
KTC28_09075
Enzymes [BR:
pmea01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
KTC28_09075
Transfer RNA biogenesis [BR:
pmea03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KTC28_09075
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
UAJ11787
LinkDB
All DBs
Position
complement(1910897..1911511)
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AA seq
204 aa
AA seq
DB search
MTIYLHEGDLPEDVFAPGPIAVDTETMGLHPARDRLCLIQLADGHGDEHLVRFAAGHYDA
PVLKRILADPARLKLYHFARFDLAVIQAYLGVRAGPVFCTKIASKLVRTYTDRHGLKDLL
RDTIGVDVSKAQQSSDWGAPVLNDAQKDYAASDVRYLHRAVEVLRERLAREGRTGLAEAC
FDFLPWRADLDLAGWAESDIFAHL
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgaccatctatctgcacgagggcgacctgcccgaagacgtcttcgctcccggcccaatc
gcggtcgacaccgagacgatggggctgcatccggcgcgcgaccggctgtgcctgatccag
cttgccgacggccacggcgacgaacatctcgtccgattcgcggcgggccattacgatgcg
ccggtgttgaagcgcatccttgccgatccggcgcggctcaagctgtatcacttcgcccga
ttcgatctcgcggtgatccaggcgtatctcggcgtccgcgccggaccggtgttctgcacc
aagatcgcgtcgaagctggtccggacctacaccgaccgtcacgggctcaaggacctgttg
cgcgatacgatcggcgtcgacgtgtcgaaggcgcagcaatcgtcggattggggcgcaccc
gtcctgaacgacgcccagaaagactatgccgcatcggacgtccgttaccttcaccgcgcg
gtcgaggtgcttcgcgaacggctggcgcgcgaggggcgcaccgggctcgccgaggcgtgc
ttcgacttcctgccctggcgcgccgacctcgatctcgccggctgggccgaatcggacatt
ttcgcgcatctatga
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