Glacieibacterium megasporae: KTC28_09185
Help
Entry
KTC28_09185 CDS
T08573
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmea
Glacieibacterium megasporae
Pathway
pmea03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmea00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KTC28_09185 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmea03021
]
KTC28_09185 (rpoC)
03400 DNA repair and recombination proteins [BR:
pmea03400
]
KTC28_09185 (rpoC)
Enzymes [BR:
pmea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KTC28_09185 (rpoC)
Transcription machinery [BR:
pmea03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KTC28_09185 (rpoC)
DNA repair and recombination proteins [BR:
pmea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KTC28_09185 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
DUF6744
Motif
Other DBs
NCBI-ProteinID:
UAJ11805
LinkDB
All DBs
Position
1930392..1934573
Genome browser
AA seq
1393 aa
AA seq
DB search
MNQELMNFFNPAAKPETFDQIQISLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKS
LPSRIGMLLDMPLKNLERVLYFEQYVVLEAGMTPMKKFDLLTEDELVTAQDEYGEDGFRA
GIGAEAIRELLAEMDLEGEMEILREDLRTTKSELKPKKIIKRMKVVESFIESGNKPEWMV
LQVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRM
LQEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMDREGEPGAGMAFGNMAEVHQALH
AKAVTLHSKIVARVETTDEAGNMVLRRVTTTPGRMLLGETLPKSHKVPFETINRLLTKKE
IADVIDTVYRHCGQKETVLFADAIMTLGFQNAFKAGISFGKDDMVIPPEKEKMVNDTRAM
VKDFEQQYQDGLITQGEKYNKVVDAWARCGDKVADAMMREISARPIDDAGREKPINSIYM
MAHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCVVIEDDCKTERGMTMKAIVEGGNTIVSLSERILGRTV
LDDIVDAKTGEVLAPAGMLLSEVDVARIEKAAVAEVKIRSPLLCETKGGVCGTCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVSEQSTLDALVDGTVLLRNMST
IKDSRGRNISMARNGELVLLDSDGRERSIHRIAYGTALIHLDGAIVSKGDRLADWDPYTL
PVITEKSGKVKYQDLIEGLSMSENVDDATGIAQKVVQDWRSVKQKEELRPRITLLDDTSG
ESARYMLAVGAILSVADGQDVEAGDVVARIPKDAAKTRDITGGLPRVAELFEARIPKDNA
IIARINGRVEFGKDYKTKRRINIRGDDAELAEYMIPKGKHVSVQEGDYVRRGDYLIDGNP
NPHDILDVLGIEPLAEYLCAEIQEVYRLQGVRINDKHIETIVRQMLQKVEITKSGDTTML
VGEQVDRLEMEEQNAKLGKNEVGAEGKPVLLGITKASLQTKSFISAASFQETTRVLTEAA
VQGKIDTLTGLKENVIVGRLIPAGTGAAMARMRVTATSRDAALRASQAAKQVVAVPLPAE
ADILSSPLGEVAG
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgatgaacttcttcaacccggcagcgaagccggagacgttcgaccag
atccagatcagcctggcgtcgcccgagcgaatccgctcgtggtcgttcggcgagatcaag
aagcccgagaccatcaactaccggaccttcaagcccgagcgcgacggcctgttctgcgcg
cgcatcttcggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaag
tacaaggggatcgtctgcgagaagtgcggcgtcgaggtcaccgtctcgaaggtccgccgg
gagcggatgggccacatcgagctcgctgctcctgtcgcgcacatctggttcctgaagtcg
ctgccgtcgcgcatcggcatgctgctggacatgccgctcaagaacctcgagcgcgtcctg
tacttcgaacagtatgtcgtcctcgaagccggcatgacgccgatgaagaagttcgacctc
ctcaccgaggacgagctcgtcaccgcgcaggatgaatatggcgaagacggcttccgcgcc
ggcatcggcgccgaggcgatccgcgaacttctcgccgagatggacctcgagggcgagatg
gagatcctccgcgaggacctccgcacgaccaagtcggagctgaagccgaagaagatcatc
aagcgaatgaaggtcgtggagagcttcatcgaatcggggaacaagcccgagtggatggtg
ctccaggtcgttccggtcatcccgcccgaactgcgtccgctcgttccgctcgacggcggc
cgttttgcgacgtcggacttgaacgacctgtatcgccgcgtgatcaaccgcaacaaccgc
ttgaagcgtctgatcgagctgcgcgcgccggacatcattgtccgcaacgaaaagcggatg
ctgcaggaagcggtcgacgccttgttcgacaacggccgtcgtggccggacgatcaccggt
gccaacaagcgtccgctcaagtcgctgtccgacatgctcaagggcaagcaggggcgcttc
cgccagaacctgctcggcaagcgcgtcgactattcgggtcgttcggtcatcgtcaccggt
ccggagctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctactcgcgcctcgacgccaagggcctgtcgatgaccttgaagcaggcgaag
aagtgggtcgagaaggagcgcaaggaagtctgggacatcctcgacgaggtgatccgcgag
catcccgtcctgctcaaccgcgcgccgacgctccaccgtctgggcatccaggcgttcgag
ccggttctgatcgagggtaaggcgatccagctgcacccgctggtctgctcggccttcaac
gccgacttcgacggcgaccagatggccgtccacgtcccgctgagcctcgaggcccagctg
gaagcgcgcgtactgatgatgtcgacgaacaacatcctcagccccgccaacggcaagccg
atcatcgtgccgtcgcaggacatggtcctcggactgtattacctgtcgatggaccgcgag
ggtgagccgggtgccggcatggcgttcggcaacatggccgaagtccaccaggcgctccac
gccaaggcggtgacgctccactcgaagatcgtcgcgcgcgtcgagacgaccgacgaggcg
ggcaacatggtcctgcgccgcgtcaccacgaccccgggccggatgctgctcggcgagacg
ctgccgaagtcgcacaaggtgccgttcgagacgatcaaccgcctcctgaccaagaaggag
atcgccgatgtcatcgacaccgtctatcgccactgcggccagaaggagaccgtgctgttc
gccgacgcgatcatgacgctcggcttccagaatgcgttcaaggcgggcatcagcttcggc
aaggacgacatggtcatccctcccgagaaggagaagatggtcaacgacacccgcgcgatg
gtgaaggacttcgagcagcagtatcaggacggtctgatcacgcagggcgagaagtacaac
aaggtcgtcgatgcgtgggcacgttgcggtgacaaggtcgccgacgcgatgatgcgcgag
atttcggcacgtccgatcgacgacgccggacgcgagaagccgatcaactcgatctacatg
atggcccattcgggtgcgcgtggttcgcaggcgcagatgaagcagcttgcgggtatgcgc
gggctcatggcgaagccgtcgggcgagatcatcgagacgccgatcatctcgaacttcaag
gaaggtctgaccgtcctcgaatacttcaactcgacccacggcgcgcgtaagggcctcgcg
gacaccgcgttgaagacggcgaactcggggtacctgacgcggcgtctggtcgacgtgtcg
caggattgcgtcgtcatcgaggacgactgcaagaccgagcgcggcatgacgatgaaggcg
atcgtcgaaggcggtaacacgatcgtctcgctcagcgagcgcatcctcggccggaccgtg
ctcgacgatatcgtcgacgcgaagacgggcgaggtgctggcgcccgccggcatgctgctc
agcgaagtcgacgtcgcgcggatcgagaaggcggcagttgccgaggtcaagatccgctcg
ccgctgctgtgcgagaccaagggcggcgtctgcggcacctgctacgggcgcgatctcgcc
cgcggtacgccggtcaacatcggtgaagctgtcggcgtcatcgccgcgcagtcgatcggt
gagccgggcacccagttgacgatgcggaccttccacatcggcggcgcggcgcaggtcagc
gagcagtcgacgctcgacgcgctcgtcgacggcaccgtgctgttgcgcaacatgtcgacc
atcaaggacagccgcggtcgcaacatctcgatggcgcgcaacggcgaactcgtcctgctc
gactcggatggtcgtgagcgctcgatccaccgcatcgcctacgggaccgcgctgatccac
ctcgacggggcgatcgtcagcaagggcgaccgtctggccgactgggatccgtatacgctt
ccggtcatcaccgagaagtcgggtaaggtgaagtatcaggacctgatcgagggcctgtcg
atgtcggagaacgtcgacgacgcgaccggcatcgcgcagaaggtggtccaggactggcgc
tcggtgaagcagaaggaagagcttcgtccgcgcatcaccctgctcgacgacacatcgggc
gagagcgcgcgctacatgctcgcggtcggcgcgattctgtcggtcgccgatggtcaggac
gtcgaggcgggcgacgtcgtcgcgcgcatcccgaaggacgccgccaagacgcgcgacatc
accggcggtctgccgcgcgttgccgagctgttcgaggcgcgtatcccgaaggacaatgcg
atcatcgcccgtatcaatgggcgggtcgaattcggcaaggactacaagaccaagcgccgc
atcaacatccgcggtgacgatgccgaactcgccgaatacatgatcccgaagggcaagcat
gtctcggtccaggaaggcgactacgtccgccgcggcgattatctgatcgacggcaacccg
aacccgcacgacatcctcgatgtcctcgggatcgagccgctcgccgaatatctgtgcgcc
gaaatccaggaggtctatcgtctccagggcgtgcggatcaacgacaagcacatcgagacg
atcgttcgccagatgctccagaaggtcgagatcacgaagtcgggcgacacgacgatgctc
gtcggcgagcaggtcgaccggctcgagatggaggagcagaacgcgaagctcggcaagaac
gaagtcggcgccgagggcaagccggtcctgctcgggatcaccaaggcgtcgctccagacc
aagagcttcatcagcgccgcgtcgttccaggagacgacgcgcgtgctgaccgaggcggcg
gtccagggcaagatcgacacgctgacgggcctcaaggaaaacgtcatcgtcggccgcctg
atcccggcgggtaccggcgcggcgatggcgcggatgcgggtgacggcaacgtcgcgcgac
gccgcgctgcgggcctcgcaggcggcgaagcaggtggtggcggtgccgctgcccgccgaa
gccgacatcctgtcgtcgccgctgggcgaagtcgcgggataa
DBGET
integrated database retrieval system
