Polymorphobacter megasporae: KTC28_14330
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Entry
KTC28_14330 CDS
T08573
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pmea
Polymorphobacter megasporae
Brite
KEGG Orthology (KO) [BR:
pmea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmea03016
]
KTC28_14330 (rnd)
Enzymes [BR:
pmea01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
KTC28_14330 (rnd)
Transfer RNA biogenesis [BR:
pmea03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KTC28_14330 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
UAJ09478
LinkDB
All DBs
Position
3067098..3068264
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AA seq
388 aa
AA seq
DB search
MLIHPLITDTVTLSALCDRLKTVDFVTVDTEFMRENTFFPDLCLLQIAGGGEAAAIDPKA
PGIDLAPLLKLLVEDDVLKVFHAAGQDLEIIYNLTGKTPSPLFDTQVAAMALGQGEQVSY
TNLVQSYLGVAVDKGARFTDWARRPLNDRQIDYAIGDVTYLAQLFPKMVDKLRSTGRGAW
LDDEMARVCDPATYANDPETAWLRLRVPSRKPEVLGRLKALAAWREREAKSKDVPRGRIV
KDETLGDLAATAPKSQADLAKVRGLSAAWASNDIGRRLMRALEEAEPMAAADMPTREVAR
PGLSTEGALIADLLKLLLKIRAKEANVAPKLIARGDELDAIAGGVRDGLVVLGGWRYDVF
GKDALALIDGRLGFTVKAGRLTMTSTAA
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgctgattcacccgttgattaccgatactgttacgctttccgctttgtgtgaccgcctg
aagaccgttgattttgtcacggtcgacaccgaattcatgcgcgagaacacttttttcccc
gatctttgcctgctccagatcgccggcggcggcgaggcggcggcgatcgaccccaaggcc
cccggcatcgaccttgcgccgctgctcaagctgctcgtcgaggacgacgtcctcaaggtg
ttccacgccgccgggcaagacctcgagatcatctacaacctgaccggcaagaccccctcc
ccgttgttcgacacgcaggtcgcggcgatggcgctcggccagggcgagcaggtcagctac
acgaaccttgtccagtcgtatctcggcgtcgcggtcgacaagggcgcgcgcttcaccgat
tgggcacggcgtccgctcaacgaccgccagatcgactatgcgatcggcgacgtcacctat
ctcgcgcagctgttccccaagatggtcgacaagttgcgctcgaccgggcgcggcgcgtgg
ctcgacgacgagatggcgcgggtctgcgatcccgcgacctacgccaacgatcccgagacc
gcgtggctccgcctccgcgtgccgagccgcaagcccgaggtgctcggccgcctcaaggcg
ctcgcggcgtggcgcgagcgcgaggcgaagtcgaaggacgtcccgcgcgggcgaatcgtc
aaggatgagacgctgggcgaccttgccgcgaccgcgccgaagtcgcaggccgacctcgcc
aaggtgcgcggcctgtcggcagcctgggcgtcgaacgacattgggcgtcggctgatgcgg
gcgctggaggaggccgagccgatggccgccgccgacatgccgacccgcgaagtcgcccga
ccgggactgtcgaccgagggcgcgctgatcgccgacctgctcaagctgctactcaagatc
cgcgccaaggaggcgaacgtcgcgccgaagctgatcgcgcgcggcgacgagctcgacgcg
atcgccgggggggtccgcgatgggttggtcgtcctcggcggctggcgctacgacgtcttc
ggcaaggacgcgctcgcgctgatcgacgggcggctcgggttcacggtcaaggccggacgg
ctgacgatgacgtcgaccgcggcgtaa
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