Polyergus mexicanus: 138934196
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Entry
138934196 CDS
T10742
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
pmec Polyergus mexicanus
Brite
KEGG Orthology (KO) [BR:
pmec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmec03019
]
138934196
Messenger RNA biogenesis [BR:
pmec03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
138934196
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
138934196
NCBI-ProteinID:
XP_070153778
LinkDB
All DBs
Position
Unknown
AA seq
915 aa
AA seq
DB search
MRPHKFKLPCDVDSFPQIDQKVVIVSVFGKSQYRAKGCKMEMLSSILQLHHLDEPEIDKD
SWCEIEGYYNPREKTVFLHLRGFLDTHTLLTEYDKFTKNQDCKDFLSVWAHMRDKYAKAL
LVLFHISHVIILTHPTHTFDYSYINLFHAMDTVRQKISPRLSDVLNSIHNLPKDWITNIR
PCSPRVLFYFETCPTVFQNPDIDANIKKLEHSLEDQIYHMLRKNRIVTNISSNSLFAIPA
NQEFVYVHTGNTDSRDILSHMARKLMQSCKSSSGNTTSRSLISLDSNSIVTDDTGIETRS
FKLFLQQHINLAFAKGFDDNVGRHSVPAYFEIPTLNIFCQVANKVFDYFIYGTDKELSTL
HNLLDTDVKFSKSRCSKVLPRALQAYQENLPQHYTRAYHESKLAHAMAVFEMHARGPLFE
EFSEKLQAECDKHWRAGRQMCEVLSLTGHPCTNPIHKGGSEGAGGGEQTELREDDNELST
REHCSGVRYVCACNCGRIQGSREDPFSLRQANYDYFQVLAKQCGCAQLESIQFPVFQPST
HNYRAAQLFSAGKRHDSFSRNGSSTPQEDMQACSLGTDSLNDGITDYGSGGQSSMTSDPI
GEDIPRLSGKTSLTPSDSQKVIIEVTDSDAENSKDKSLVRQPSTTEYLPGMLHTESPSGL
LPQFSSWSLICLGPSSLYSHNLGLQHQTGVFPTSAFLLPWDVTVRLEHQKERSNSLWPIM
GFTGSDHGIHGSYCSRGGKNFQNINTVRGRKSKGGKEFVVKIFVGVEYECPRGHRFMASA
PDKVLKTTGNGIVKDSGNKVTSSTADMPLYFACPCRQTKPLIAQLMRIHVVTPKAPVHVT
LNPRIQPGPPPCPTFVTGCEEPIKLSQSAYWILRLPYVYMGEKGPYLPPKEPVSTSHGRL
LAGMYGISEVMPEKK
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgcgaccgcacaaatttaaactaccatgtgatgtggacagttttccacaaattgatcag
aaggtagtgattgtctccgtatttggtaagtctcaatatcgagctaaaggatgcaagatg
gaaatgctcagttctatactccagttacatcatctggatgaaccagagattgacaaagat
tcttggtgtgaaattgaaggatattataatcctcgtgaaaagacagttttcttgcacttg
agaggattcttggatactcatacacttttaactgaatatgacaagttcacaaaaaatcag
gattgcaaggactttctcagtgtatgggcacatatgagagataaatatgcaaaggcactc
ctagtgctgtttcatatatctcatgtgattatacttactcatccgactcatacctttgat
tatagttacataaatctttttcatgctatggatacagtcaggcagaaaatctcgccacga
ctttccgatgtgttaaactctattcataatctacctaaagattggatcacaaacatcaga
ccatgctcgccgcgagtattattttattttgaaacctgtcctacagtgttccaaaatcca
gacattgatgctaatatcaaaaaattagaacattccctcgaagatcaaatttatcatatg
ttaaggaaaaatagaattgttaccaatatcagttcaaattccttgtttgcgataccagct
aatcaggaatttgtatatgtgcataccggaaatacagattcaagggatatactgagtcat
atggcaagaaaattgatgcaaagctgcaaaagcagttctggcaatacaacatcgagaagt
ctcatcagtttagattcaaatagtattgtaacggatgatactggaattgaaacgcgctca
tttaaactatttttgcaacaacacataaatttggcttttgcaaaagggtttgatgacaac
gtcggccgacactctgtaccagcttatttcgaaatacccactctgaatatattttgccaa
gtagcaaacaaggtattcgattattttatttatgggaccgacaaagaactgtcaacactt
cataatttattagatactgatgtgaaattcagtaaaagccgatgtagcaaagtacttcca
agagctttacaagcatatcaggagaatttaccacagcattacacaagagcgtatcacgaa
tcgaaactagcgcatgcgatggcagttttcgagatgcatgctcgcggtccgttgttcgaa
gagttcagtgaaaagttacaggccgaatgtgacaaacattggcgtgctggcagacaaatg
tgcgaagtattgtcactcacgggtcatccttgtacaaatcccattcacaagggaggtagc
gaaggtgctggaggcggagaacaaactgaacttagagaggacgataacgaactatctacc
agagaacattgcagtggagttagatatgtatgtgcttgcaattgtggtcgaattcaaggt
tcgagagaagatcctttcagtctacgacaggccaattacgactatttccaagtgttagcg
aagcaatgcggttgcgcgcaattggagagtatacagttccccgtgtttcaacctagtaca
cacaattacagagcagcgcaattattttcagcgggaaaacgccacgattccttcagtcgc
aatggatcttctacgccccaggaagacatgcaagcctgtagtttaggaaccgatagtttg
aatgatggaattacagattatggtagtggcggtcaatcgtcgatgacgagcgatccgatc
ggagaggatatccccagattgagcggcaaaacaagtctcacgccgagtgattcacagaaa
gttatcatagaagtcactgacagcgacgcggaaaactctaaagacaaatctttggttaga
caaccatcgacaacagaatacctgcctggaatgttacacaccgaatcaccatccggcttg
ctaccgcaattctctagctggtccctgatatgcctgggaccgagtagtctttattctcac
aatttaggattgcagcatcaaaccggggtatttcctacctccgcatttctactcccatgg
gatgtgactgtcagattggagcatcaaaaggagcgtagtaactccttgtggcctataatg
ggatttacaggatctgatcacgggattcatggaagctattgttcgcgaggaggcaaaaat
ttccaaaacattaataccgttcgtggtcgtaagtccaagggcggcaaagaatttgtggta
aagatattcgtcggcgtggaatacgagtgcccacgcgggcacagattcatggcgtccgcg
cctgacaaggtactaaagaccactggaaatggtatagtgaaagatagtggaaataaggtg
acgtccagcacagccgatatgccactctactttgcgtgcccttgcagacagacgaaacca
ttgatcgctcagttaatgagaatccacgtggtgacacctaaagcaccagtacacgtcacg
ttgaacccccggattcaacctggtcctccaccttgcccgacattcgtcaccggatgcgaa
gaaccgatcaaactatcacaaagcgcatactggattttaagattgccttacgtatacatg
ggcgagaaaggaccatatttaccacctaaggaaccggtatctacgtctcacgggcgtttg
ttagccgggatgtacggcataagcgaagttatgcctgagaagaaatga
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