Polyergus mexicanus: 138935956
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Entry
138935956 CDS
T10742
Symbol
Pcm
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pmec Polyergus mexicanus
Pathway
pmec03008
Ribosome biogenesis in eukaryotes
pmec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmec00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
138935956 (Pcm)
09123 Folding, sorting and degradation
03018 RNA degradation
138935956 (Pcm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmec03019
]
138935956 (Pcm)
03009 Ribosome biogenesis [BR:
pmec03009
]
138935956 (Pcm)
03016 Transfer RNA biogenesis [BR:
pmec03016
]
138935956 (Pcm)
03036 Chromosome and associated proteins [BR:
pmec03036
]
138935956 (Pcm)
Messenger RNA biogenesis [BR:
pmec03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
138935956 (Pcm)
mRNA degradation factors
5'-3' decay
5' exonucleases
138935956 (Pcm)
Ribosome biogenesis [BR:
pmec03009
]
Eukaryotic type
Pre-60S particles
RNases
138935956 (Pcm)
Transfer RNA biogenesis [BR:
pmec03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
138935956 (Pcm)
Chromosome and associated proteins [BR:
pmec03036
]
Eukaryotic type
Gene silencing
piRNA pathway
138935956 (Pcm)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
EC042_2821
Motif
Other DBs
NCBI-GeneID:
138935956
NCBI-ProteinID:
XP_070157032
LinkDB
All DBs
Position
Unknown
AA seq
1650 aa
AA seq
DB search
MGVPKFFRYISERYPCLSEVIKEHQIPEFDYLYLDMNGIIHTCSHPNDNVCFRISEKDIF
KNIFHYIEVLFNMIHPQKLFFMAIDGVAPRAKINQQRGRRFRAAKDAEVQEAKAKAKGIE
IPKEKRFDSNCITPGTLFMDKLGEQLKRFVEHKISMDDTWKKCKILFSGSEVPGEGEHKI
MDYIRYMKASKDYNCNSRHCLYGLDADLIMLGLCSHEPNFSLLREEVKFGKQQVRMTPEE
TKFCLLHLSLLREYIEHEFSPIKDKLSFAFDIEKIIDDWVLMGFLVGNDFIPHLPNLHIT
NGALPILYRAYMEVLPTLEGYINEAGTLKLDRFEKFMEKLSRLDLEQFNEQYADLKYFES
KTGRRPNETERHVYKKSEDDETVFPQKIQNKDLDALIKSTTEMSLGQSDDDNDDEDDSDY
INDIDMIDDESDSDIYNMEFVQHKRDYYMNKLEYKNVDAEVLRSQAEGYVRAIQWNLHYY
YHGCCSWSWYYPHHYAPYISDIKDFKDLKLEFELGEPFLPFQQLLAVLPAHSKDLLPKTF
QSLLIEESSPIINYYPHDFKTDLNGKKQEWEAVVLIPFIDEKLLLAAMDPHLSKLTAEEQ
ARNKHGPMCLYTYNDAIRSVQKATTYFPEFINCAQLTLINRDEIFVPREQLVGGLSPDFN
LDIYYPGFPVLRHLQHTAHLEKTKVKVFQQASMGENMILSIISKEAPNLTTVASELLGKS
VCVGWPHLKEALVIGVADNDVKFSLINPLEGYSNNNLKKEVVKDLLNVEWCTQKKQIRDT
HMSRLGIDIGDTNVLLYARTYLGNKCIFGAQGKVTIEKQWSDFPMAYAYQTVVKDISIHS
KKLPVYKTMHDIFVPGTFCFMLGHPYYGAMGEVMQYKDHPKPRRIKICIKITKEPTFEII
KQAYVQQRTRYMHGSIAAQRLGISSHLLSRITGTIYVIQASKEEIAKYNVGLNLKFNKKN
EEMTGYTRKENSQWLYSAKAIELIRNYMTKCPNLFERLAQNITDDIFQEEDLFNKGSNEL
KDIVIWLKTQLDGIESRACGMDIVEMELVKQIEQETEKYLKTQNTKMVFIQVKPQLLFKP
GLHLRSVPPDPSSQNRLFDRICCVRNGFSVPLGAKGTIIGIRKANNPADIMCDVLFDQPF
IGGLTLSGCSASRGYRLAAMDFINISFGERNEQGNPANESADCRKQIANPASPNKKNDQS
SKSYPEMQLAKKGLEKLSRDISLGIMVQQNMIESDSKTVPYAALPQNSRQNVPPNQTSEF
QALWDELHKIQKPNGPPEKISSNPMMTKVKPFSNNHNMQSPQDPSAFLKAMLKIPDVNAQ
TNKQQSKHSTSAMTLQKATVSQKDQTLNPPPLVQQMFDHARRTEERKERAHSVWYSTQLL
QHFSYSGAGIPKYNYIIDEKTGLISAHIMVDHARVFKGDPCITHELATESAAKRAYKALN
LNMVATHDAKIVLTPRPQWYNNQQTNWVQNIRPPIMPMGPPKMPPFPQNLLVQPNIFYPK
WNQKMPPNPAVGQTALYNQGKQQQPKQGQQKGPQNGPKMEIKNTFVPLQAQKKSRNANVK
QAARETNPNSKKNSSPKVQQQQQKKEETSPKKEKQEVVNKVREKTSNERQQQSQQQQLQY
NAGKSSKPRKSRVAAKFGSPPLSNGGEPPQ
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgccgaaattctttagatacataagcgagagatatccctgcctcagcgaggtc
ataaaggaacatcagataccagagttcgattatttatatttagatatgaatggtatcata
catacatgttcacatccgaatgataatgtttgtttccgtatttctgagaaggatattttt
aaaaacatatttcactatatagaagtgttattcaacatgatacacccacaaaagttgttc
ttcatggcgatagatggtgtagcacctagagctaaaatcaatcagcagaggggtcgacga
tttagagctgccaaggatgcagaagtacaagaggctaaagctaaagcaaaaggtattgaa
atacccaaggaaaagagatttgactcaaattgcataaccccaggaacactttttatggat
aaacttggcgaacagctcaaacgttttgttgaacataaaatttctatggatgatacttgg
aagaaatgtaaaatactgttcagtggatctgaggttcctggagaaggagagcataaaatt
atggattatataagatatatgaaagcaagcaaagattacaactgtaattccagacattgt
ttatatggtctagatgctgatttaataatgttaggtctctgttcgcatgagccaaatttc
tctcttttaagagaggaggtcaaatttggtaaacaacaagtaaggatgactcctgaggag
acaaagttctgccttcttcatttgtcacttttacgagaatatatagagcatgagttttca
ccaatcaaagataaattatcttttgcatttgacattgagaaaataatcgatgactgggtt
ttaatgggttttctcgtgggaaatgattttattccccatttgccaaatttacatattaca
aatggtgcactgccaattctgtaccgtgcatatatggaagtattaccaacactcgaaggt
tatataaatgaagcaggaacattaaaactggatcgttttgaaaagtttatggaaaaactt
agtcgtttagacttagaacaatttaatgaacagtatgctgatttaaaatattttgaaagt
aaaacaggtagacggcctaatgaaactgaacgtcatgtatataagaaatcggaagatgac
gaaactgtatttccgcaaaaaatacaaaataaagatttagatgctttaattaaaagtact
acagagatgtccttaggtcagtctgatgatgataatgatgatgaagatgatagtgactat
ataaatgatatagatatgatagatgatgaatctgatagtgatatatataacatggaattt
gtacaacataaaagagattattatatgaacaaattggaatacaaaaatgtcgatgcagaa
gttttacgttcgcaagctgaaggctatgtcagagcaatacaatggaatttgcattattat
tatcatggttgttgtagttggtcatggtattatccacatcattatgccccatacatttca
gacataaaagattttaaggatttgaaattagaatttgaattgggagagccattcttacct
ttccaacaattattagctgtattacctgcacatagtaaagatctattaccaaaaacattc
caatcactattgatagaagagtcttctcctattataaattattacccacatgattttaaa
actgatctaaatggaaaaaaacaggaatgggaagcagttgtgcttattccattcattgat
gaaaaactattgttggctgctatggacccacacttatcgaaattaacagcagaggaacaa
gcaagaaacaaacatggaccgatgtgtctatacacatataatgatgcaatccgaagtgtt
caaaaggcaacaacatactttccggaatttatcaattgtgctcagttaactttaataaac
cgcgacgaaatttttgtgccgcgagaacaattagttggaggattgtccccggatttcaat
ctcgatatttattatccgggatttcctgtattgcggcacttacaacatacagcgcattta
gaaaaaacaaaagttaaagtattccaacaggcatcaatgggagaaaatatgatcctaagt
ataatatcaaaagaagcacctaatttaacaactgtagcgtcagaattattagggaagagt
gtatgtgtcggatggcctcacctgaaggaggctctcgtgattggtgtggctgataacgac
gtaaaattcagtttaattaatccactagagggttacagcaataataatctgaaaaaggaa
gtcgtgaaggatttgttaaatgtggaatggtgtacacaaaagaaacaaatcagagacaca
catatgtcgcgtcttgggatagacataggcgatacgaacgtattactttacgcccgtaca
tacttgggaaacaaatgcattttcggtgctcagggaaaagtgacgatcgagaaacaatgg
agcgattttcccatggcttacgcttatcagactgtggttaaagacatttctatccacagt
aaaaaactaccggtttataaaactatgcatgatatttttgtaccaggcactttctgtttc
atgttgggacatccttattatggtgcaatgggagaggttatgcaatataaggatcatcca
aagccacgcagaattaaaatttgtataaagattacaaaggagccaacatttgagatcatt
aaacaagcctatgtgcaacaaaggactcgatatatgcatggcagtattgctgcacaacgt
cttggaataagtagtcatcttttaagtagaattactggaacaatttatgttatacaagca
tcgaaagaggaaattgccaaatataatgttggattgaatttaaagttcaataaaaagaat
gaagagatgactggttatactagaaaagaaaatagtcaatggttgtacagtgcaaaagca
attgaattgattcgcaattatatgacgaaatgtcccaatttgttcgagcgtttggctcaa
aacataacagacgacattttccaagaagaggacctattcaacaagggatcaaacgagttg
aaagatatagtcatatggctaaaaacacaattggacggtatagaaagtcgtgcctgtggc
atggatatcgtcgaaatggaattagtgaaacagatcgagcaagaaacagagaaataccta
aagactcaaaataccaaaatggtctttatacaagtaaaaccacaattgctcttcaaaccg
ggattacacttgcgtagtgtgccgcctgatccgagttctcagaatcgtttattcgacaga
atatgctgcgttcgaaacggtttcagcgtaccgctcggggctaagggtactataatagga
atacgaaaggcgaacaatccagcggacattatgtgcgacgttttgtttgaccagcctttc
atcggcggacttacattaagcggttgctctgcatctcgcggctatcgtttggcagctatg
gacttcataaatatcagctttggtgaaagaaacgagcaggggaatccagcaaatgaatcg
gcagattgccgcaaacaaatcgcgaatccagcttctcctaataaaaagaacgatcaatcg
tcgaagtcgtatccggaaatgcaactcgctaagaaaggactcgaaaaattaagtcgagac
attagtttgggtataatggtacaacaaaacatgatagaatcagactcaaagacggtgcct
tacgcggcattgcctcaaaattcccgccagaatgtgccacctaatcaaacgtctgaattt
caagcgctatgggacgaattgcataagatacagaaaccgaacggaccgcctgagaaaata
tcatcgaatccaatgatgacaaaggttaagccattcagcaacaatcataatatgcaatcg
ccacaagatcctagcgcattcttgaaagctatgttaaagattcccgatgtaaatgcgcaa
acaaataagcaacagagcaaacactctacatccgcgatgacgcttcagaaagcgacagtt
tcgcaaaaagatcaaacattaaatcccccacctttggttcaacaaatgtttgatcatgct
cgacgaacggaagagagaaaagagagagcacattcagtttggtatagcacacaattatta
caacatttctcgtatagcggagctggcataccaaaatataattatatcatcgatgaaaaa
acgggtttgattagcgcccacattatggtagatcatgcaagagtttttaagggcgatcct
tgcatcactcacgaactagccacagaaagtgctgcaaaacgagcgtataaggcgttaaat
ctaaatatggtagcgacacatgatgcgaaaatcgtattgacgcctcgaccacaatggtat
aataatcaacaaactaattgggttcaaaatatccgacctcctataatgcccatgggacct
ccgaaaatgccaccgtttccgcaaaatctacttgtgcagcctaatatattctacccgaaa
tggaaccagaaaatgccgccaaatccagcggtcggacaaaccgcgttatataaccaaggc
aaacaacaacaacctaaacaaggacaacaaaagggtcctcagaacggaccgaagatggag
attaagaacacgttcgtgccgttacaagcacagaaaaagagcagaaacgccaatgtaaaa
caagctgcaagagaaaccaatccaaattccaagaagaattcgagccctaaagtgcaacag
caacagcaaaaaaaagaagaaacgtcacccaagaaagaaaaacaagaggttgtaaataag
gtcagagaaaagacatcaaacgaacggcaacaacaatcacagcaacaacagctgcaatat
aacgcgggaaaatcgtccaaacctaggaaatcgcgtgtcgccgcgaaattcggttcgcca
cccttatcaaatggtggtgaacctccccagtga
DBGET
integrated database retrieval system
