| Entry |
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| Symbol |
Pcf11
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| Name |
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
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| KO |
| K14400 | pre-mRNA cleavage complex 2 protein Pcf11 |
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| Organism |
pmec Polyergus mexicanus
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:pmec00001]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138937307 (Pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:pmec03021]
138937307 (Pcf11)
03019 Messenger RNA biogenesis [BR:pmec03019]
138937307 (Pcf11)
Transcription machinery [BR:pmec03021]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138937307 (Pcf11)
Messenger RNA biogenesis [BR:pmec03019]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
138937307 (Pcf11)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
Unknown
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| AA seq |
1916 aa
MASTKSKEVADEYISSLSDLTINSKPLINMLTMLAEDNIEHASAIVQAVETHLQKVRSDI
KLPVLYLIDSIVKNVNGDYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPPK
KLFSLDVRVQSIDPAWPITAPPTNISSGSIHVNPRFFSTMPQQTTTSIVPPVKLPSGEPV
TTTEAAMREQLLKKQRELLELQKKKIELELLQAKASLEQQQRQLDKQAGSLKAEVVIPTA
HVPPTTEAAAQGKPVAPVIPNQTPKQVAKQFPAAAASLLKNAGANSGPRIAPASSIAVAS
AKPVSRDPRLKPTPAVQDATTVPTIDPRQRPSTTSPKESRSEGQTQPVANTIVTSNQLKQ
QLPSKSAVTSTVNKPPASPAGSDNPTLLNVINNNHADMNLNNSNNKTFSGNINKDAVSHR
TSQKKDPRLTSNSSGNLNSSKIGQGLSVCNNSSSSILSASNRGSGGGDSNKSKDSKSSNS
LRGSSSSTADKSSTSSKSSHRKVGNKSRSKQPQICPSKIQKVDRDSSPVRSKSREKDNGD
SSPSSRTSPQSSFQASKNRKKNTKSRKRSPSPPYRIPRRNDIKSSSSLSSSGGVTEEEQS
GSLIVSPPHPPAFKEIRPNARQRNYVRRNKDDSLSPERSPASAGNAQIAAEPTLESSSKD
EDLRASLSLPGTTVSISEKSDYNVCLISGSNCKTIAEEDLDLRVLPPVNTSKRRSEDIES
SPAKKTKAEKFDALFGNEDVDLRTLTHPKAGRPPTPPPPVISGEDGKDSWAKLKTPPKNE
RDKQVNNADDKRERDRNRDRLGRLRLYNKLPDDPKERRRTLSNEEQDVRSGRRGRENDKP
ERNDDRNIEIIMKQAAEQLNQGLITKTQYNTLIQEVLHMSEDRKLRAAQRKEKEGGTVIW
EKGINMDIVSGTGDRTATFSPSNDKEMIRNKEHPIPRNPNGPRWQNQPWQQPWAHPPGPP
YGGPQGHFNPDIRPIGPWQNPRHFGPMRPDYQYHGGFNHSMGPNPRLGPGMMGGPIGPNG
PIMSNLLPNGPMGPMGPMPNSPMAMGCHPAMMMNNGPMTNLMTNSNISPLASGRNLSPNA
SAKYDLDDNDQSYGGTTVKNSGSHSRELPPPDPKLLTEIARDTMKSINIDNIPREIRYYG
QTGVVFMNWDDPREIGFQDGIRRILIDDKDTITCAFNDQYKEFMYEGEIHRIKLGAPTRE
LYVDDRWYECYFGGMPITIELSGKTVSVKLEGPPPQVKIGTVKRMDLVVAKINLIINARN
MVPVFLDAKPQIFEIEGKPHTLEFTDALQTVLLNGRPFKVEFGGLPKPIIVRDKKHFIRF
SVLPRGVRAGHVKITGMKGESPTESPPTTAQKPKVDAAPTPSQLPAVEHESTSQDGSDFT
STSKPDLQLDILSSVLPSAMAPSSGLSYEAEPVENPPAPAPTLPLNMNELFQRLVETGIV
PSLMEQKKQEEEEKKESEISPVSFDKPETLKIKQPAIAAALYSGMQCSSCGARFAPELAT
RYSHHLDWHFRQNRRERDSARKAHSRPWYYDISDWIQFEEIEDLEDRVQSWFETEKQTAE
TEGMATDDTPQETLQPSVPTGSDEDSRCQVCHDTFEQFYNEEKEEWHLRPAVNYEKKNYH
PLCLEDYKEKSLVRALEKTALALEEAVSEIEEGKIECSEERPGDEFKQEKSNVEISNKEL
ELTETSEQIKESPLETATLKTKEKLADIQNSEITQDETEDKEKRENAEESTVIPDTEVNA
PMMNEEEKSPGEDVITPFENIKIKEEPLDDIGEQDNSEMFAFLDKLDHQIKEEPMDPEPE
PELDPEQIVNESGTVDTTYAAVKSSIDGNVELDSTPALVPAAPSRIKINITKPLNSNKES
EENKEKEKTAVETPVEENAEQPLVPASIKPSLQGRKLSNLPPVEKGQELSGLCSIM |
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| NT seq |
5751 nt +upstreamnt +downstreamnt
atggcatcgacaaagtccaaagaagttgcggatgagtacatctcatccctgtccgatctt
acaatcaacagtaagccgcttatcaacatgctcaccatgttggccgaagataacattgaa
catgcatcagcgatagttcaagctgttgagactcatctacaaaaggtgagaagtgacatc
aagttaccagtactctatctcatcgattcgattgtcaagaatgtaaatggagactatctg
aatctctttacgcaaaatatagtaaacacgttctgcggcgtgtttgaaaaggtcgatgag
aacacaagagccagcatgtggaagttgcggcaaacgtggaatgatgtatttccaccgaaa
aaattattttcactagatgtgcgggtacaaagtatcgatcctgcatggccaatcactgcc
cctcctactaatatctcttcaggttccatacacgttaatccacgatttttttccacaatg
cctcaacaaactacgacatcaattgttccgcctgttaaattgccatcaggggaaccagta
acaacaacagaagcagctatgcgagaacagttgctgaaaaagcaacgagaattgttagaa
ttgcaaaaaaagaagattgagctagaactgttgcaagctaaagcgagtttagagcaacag
caaaggcaacttgacaaacaagctggcagcttgaaagcagaagtggttatacccactgca
catgtccccccaactacagaggcagcagcacaaggaaaacctgtagcacctgtaatacca
aatcaaacgccgaaacaagtagcaaaacaatttcctgcagcagctgcgtcacttttaaag
aatgcaggagcaaacagcggtccacgaattgcaccagctagtagtatagcagtagcgtca
gctaagccagtctcacgagatccacgtttgaaacctactcctgctgttcaggatgcaaca
acagtaccaacaatagatccacgacaacgaccgagtacgaccagtccgaaagaatcacgg
agcgaaggtcaaacgcagccagtcgcaaatacaattgtaacctcaaaccaattaaagcag
cagttaccttcgaaatcggctgtaactagcactgtcaacaagcctccggcgagtcccgcc
ggttccgataatccgacgttattaaacgttattaataacaatcatgctgatatgaatctg
aacaatagtaataataaaacttttagtggtaatataaataaagatgctgtctcgcatcga
acaagtcaaaagaaagaccctcgattgactagtaatagtagtggtaacctaaacagctcc
aaaatcggtcaaggtttatcggtttgcaataatagttcgtcttcaatattgtcagcgagc
aatcgaggaagtggaggtggtgactccaacaagtcgaaagactcgaagagctcgaactcg
ttacgcggttcttcgtcttcgacagccgataaatcttccacttcctctaaatcctcgcat
agaaaagtagggaataagtcgcgatctaaacagccgcagatctgtccaagtaagattcag
aaagtcgacagagactctagtccagttaggtcaaaatctcgtgagaaagacaacggagac
agttcaccatcctcacgtacttctccacaatcctccttccaagcttctaaaaaccgcaag
aagaatacaaaatccagaaaacgtagtccaagtcccccatatagaattcccaggcgtaat
gatataaaatcgagttcaagtttgagcagttctggtggtgttactgaggaggagcaatct
ggttcgctgatagtatctcctcctcatccaccagcattcaaagaaatcagaccgaatgct
agacagagaaattatgtaagacgaaataaagatgacagtcttagcccggaacgttctcca
gccagtgctggaaatgctcaaattgctgccgaaccaacattggaatcctctagtaaagat
gaagatctcagagcatcactgtcactacctggcactactgtttccatatccgaaaagagt
gactacaatgtttgcctcatctctggtagcaattgcaagactatagcagaagaggattta
gatctacgagtattaccacctgttaacactagtaaaagacgcagcgaagatatagaatca
tctccagctaagaaaactaaggctgaaaagtttgatgcattatttggtaatgaagacgta
gatctgcgtacactgacccatcctaaagctggtcgtcctccgacacctccaccacccgta
atttccggggaggacgggaaagatagctgggcgaagttgaaaacgccaccaaaaaatgag
agagataagcaagtgaacaacgccgatgataaacgcgagagggatcgtaacagggacaga
ctgggtcgtctcaggctctataacaaacttccggatgatcctaaagagagaagaagaaca
ttatcgaacgaagaacaagatgtcagatcagggcgtcgaggtcgggagaatgacaagcct
gagagaaacgacgatagaaatatcgaaattataatgaagcaagctgctgaacaattaaat
caaggattgattaccaaaacgcaatataacaccttgatacaggaagtgttgcacatgagc
gaggatcgaaaattgcgagccgcacagcgtaaagagaaagaaggtggcactgtaatatgg
gagaaaggaattaatatggatatcgtgtccggtaccggagatcgcactgcgacgttcagt
ccgtccaatgacaaggagatgatacggaacaaagagcatccgataccgcgaaatcctaat
ggcccgagatggcagaatcagccatggcaacaaccgtgggcacatccaccgggaccaccg
tatggcggaccgcaaggacactttaatccggacataagaccgattgggccttggcaaaat
ccgcgacactttggaccgatgagaccagattaccagtatcacggcggctttaatcacagt
atgggacccaatccgcggttaggacccggtatgatgggtggtccgataggtcctaacggt
ccgatcatgtcgaatcttttgccaaacggtccgatgggaccaatgggacccatgccaaat
tctcctatggcgatgggatgtcatcccgcgatgatgatgaacaacgggccgatgacaaat
ctcatgacgaattcaaatatatcacctttagcatctggtagaaatttatcgccgaacgca
tccgctaaatacgacctcgatgataacgatcaaagttacggtggcacaacggtaaaaaac
tcgggatcgcacagtcgtgaattgccgccaccggatccaaaattgttgaccgagatagcg
agagataccatgaaatccataaacatcgacaatataccgcgtgaaattcgatattacgga
cagacaggtgtagtgtttatgaattgggacgatccgcgagagatcggttttcaggacggc
ataagaagaatattgatcgacgacaaagacactattacttgtgcatttaacgaccaatac
aaggagtttatgtacgagggagaaatccatagaatcaaactaggtgcacctactcgtgaa
ttgtacgtcgacgatcgttggtacgagtgttatttcggcggtatgcccataacgatcgaa
ctcagcggtaaaacagttagtgtaaaactggagggtcctcctccacaagtcaagatcggt
accgtgaagagaatggatctcgtggtagcgaaaattaatcttatcatcaacgcgcgaaat
atggtgccagtatttttggacgcgaaaccgcaaatattcgaaattgagggaaaacctcat
acgctggaatttacagatgcgttgcaaacggttcttctgaacggacgaccgttcaaagtc
gaatttgggggattacctaagcctattattgtcagagacaaaaaacatttcatcaggttt
tcagtgctacccagaggcgtccgtgctggtcatgttaagatcactggaatgaaaggtgag
agtcctactgagtcgccaccaacgacggctcaaaaaccgaaagtggatgctgcacctaca
ccaagccaattgccggctgtagaacacgaatctacgtcacaagatggttcagatttcacc
tcgacttcaaaaccagatttgcaattagatatattgtcgtcagttttaccatcagcaatg
gcgccatcatccggtttatcttatgaagccgaacctgtggaaaatccaccagcaccagca
ccgacattaccgctgaacatgaatgaattgttccaaagactggtcgaaactggcattgtt
cccagtctcatggaacaaaagaaacaggaggaagaagaaaagaaagaatccgaaattagc
ccagtttccttcgataaaccagagactcttaaaatcaaacaaccagctatcgccgcagca
ttgtacagcggtatgcaatgcagctcctgcggtgcaagattcgcacctgaattggctact
cgatatagccaccatttagattggcatttcagacaaaacaggcgcgaacgagactccgca
agaaaagcgcattctcggccatggtattacgatattagtgattggatacaattcgaagaa
atagaagatttagaggatagagttcaaagctggttcgagactgaaaaacagacggcggaa
acggaaggtatggctactgatgatacgcctcaggaaacattgcagcccagcgtaccgact
ggcagcgacgaagattcacgatgtcaggtatgccacgacacattcgaacaattttataac
gaggaaaaagaagagtggcatttgagaccagcagttaattatgaaaaaaagaattatcat
ccactctgtctggaagattacaaggaaaaaagtctagtgagagcattggaaaaaactgcc
ttggcacttgaagaggcggtctcggaaatcgaagaaggtaaaatagagtgttccgaagaa
aggcccggagatgaatttaaacaggagaaatccaatgtagaaatatcaaataaagaactt
gaacttacggaaacttcagaacaaataaaagaaagtcccttagagactgctacattgaaa
actaaagaaaaacttgctgacatacagaattctgaaattacgcaagacgaaacagaagat
aaagaaaagagagaaaatgctgaagaaagtacagttataccagatactgaggtaaacgcg
cctatgatgaatgaagaagagaaatctccgggcgaagatgtaatcacaccattcgaaaat
attaagattaaagaggagccattggacgacattggtgaacaagataatagcgaaatgttt
gctttcctggataaactggatcatcagattaaagaggaacctatggatcctgaacctgaa
cccgaactagatcccgaacaaattgtgaatgaatcgggtactgtagatacgacatacgct
gcagtgaaaagttccattgatggaaatgtagaattagactcgacaccagcacttgtacca
gcagctccatcgcggattaagatcaatatcactaaaccacttaacagtaataaagaatca
gaagagaataaagaaaaagaaaagacagcggtcgagacgcctgtagaggaaaatgcggaa
caaccgttagtaccagcttctattaaacccagtttacagggtagaaagctatcaaattta
cctcctgtggagaaagggcaggagttgtcgggactctgctctattatgtaa |
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