Polyergus mexicanus: 138938746
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Entry
138938746 CDS
T10742
Symbol
Cbc
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
pmec Polyergus mexicanus
Pathway
pmec03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmec00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138938746 (Cbc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmec03019
]
138938746 (Cbc)
Enzymes [BR:
pmec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
138938746 (Cbc)
Messenger RNA biogenesis [BR:
pmec03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
138938746 (Cbc)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
CbiA
ATP_bind_1
MMR_HSR1
AAA_16
nSTAND3
AAA_22
AAA_18
DUF8551
Motif
Other DBs
NCBI-GeneID:
138938746
NCBI-ProteinID:
XP_070162074
LinkDB
All DBs
Position
Unknown
AA seq
423 aa
AA seq
DB search
MSDEKSTRVQEFKLDPDCELRFEVESKNEKVTLELKNGLAEVFGTELVKGKKYEFIAGAK
VAVYTWQGCTVELVGKTDVSYVAKETPMGLYLNCHAAMERMRETAEKDDTRGPITMVVGP
CDVGKSTLCRILLNYAVRMGRRPIFVDLDVGQGHIAIPGTVGALLVERPSNVVEGFSQQA
PLVFHFGHKTPQANVTLYNLLVTRLAEVCSDRLQANKKAKASGIVINTCGWVKGDGYKLL
THAAQAFEVDAILVLDQERLYNELVRDMPDFVKVVFLPKSGGVVERNQAQRTEARDQGVR
EYFYGSRTPLYPHSFEVKWSEARLYKIGAPVLPASCMPLGMKAEDNLTKLVAVTPGPSLL
HHLLSVSFADSPEDDVVQTNVAGFVCVTNVDIERQTFTVLSPQPRPLPNTVLLLSDMQFM
DSH
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgaaaaatctacaagagtgcaagaatttaagttagatcccgattgtgaatta
agatttgaagttgagagtaagaatgaaaaagttacattggagttaaagaatggcctggca
gaagtatttgggacagaattagtaaaaggtaaaaagtacgagtttatcgctggcgcaaaa
gtagcggtttatacttggcaaggttgtaccgttgaattagttggaaaaactgatgttagc
tatgtggcgaaagaaacacctatgggtttatatctaaattgccatgcagcgatggaacgg
atgagagagactgcagagaaggacgatactagaggtccaataacgatggttgtgggccct
tgcgatgtgggaaagtccacgctttgtagaatattgctgaattatgctgtcaggatgggc
agaaggccgatttttgtcgatctcgatgtcggccagggacatatagcgatccccggtact
gtgggcgctctgttggtggaacggccgtccaatgtagtggaaggatttagtcagcaagcg
ccactggtttttcatttcgggcacaaaacaccacaagccaatgtgacgttgtacaattta
ctcgtcacacgcttggcagaggtatgctcggacaggctacaagctaacaaaaaggccaaa
gcttccggaattgtcataaacacgtgcggctgggttaaaggggacggctacaaattgctt
acacatgccgcgcaagcattcgaggtagatgcgatactcgtgctagatcaggagagactc
tacaatgaattggtaagagatatgccggactttgtgaaggtagtttttctaccaaagagt
ggcggagttgtcgagaggaatcaggcgcagaggactgaagcgagagatcagggtgtcaga
gagtacttctatggctctcgaacacccctttatccgcacagtttcgaagtaaaatggagc
gaggcgaggctgtataagattggggcacccgttctaccagcttcctgtatgccattgggc
atgaaggcagaagataatctgacaaaattagtggctgttacaccaggacccagtttgttg
catcacctgttgtctgtctcattcgctgattctccagaagatgatgtcgtgcagactaac
gtggccggattcgtttgcgtaaccaatgtggatatcgagaggcagacgtttactgtactc
agcccacaacctagaccattgccgaatacagttctgttattatcagatatgcagtttatg
gatagtcattag
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