Polyergus mexicanus: 138938785
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Entry
138938785 CDS
T10742
Name
(RefSeq) pre-mRNA-processing factor 6-like isoform X1
KO
K12855
pre-mRNA-processing factor 6
Organism
pmec Polyergus mexicanus
Pathway
pmec03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmec00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138938785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmec03041
]
138938785
Spliceosome [BR:
pmec03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
138938785
Complex C
U5 SnRNP specific factors
138938785
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP1_N
TPR_14
HAT_PRP39_N
TPR_19
Suf
TPR_17
TPR_16
HAT_Syf1_CNRKL1_N
TPR_2
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
TPR_8
TPR_11
TPR_15
ARM_TT21_2nd
TPR_CcmH_CycH
TPR_1
UTP6_C
ARM_TT21_N
ANAPC3
TPR_6
Iml2-TPR_39
TPR_12
TPR_9
FAT
TPR_MalT
TPR_21
ChAPs
ARM_TT21_C
TPR_Slam
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
138938785
NCBI-ProteinID:
XP_070162140
LinkDB
All DBs
Position
Unknown
AA seq
931 aa
AA seq
DB search
MAVPPVSLNTRNKKHFLGVPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAPPA
KRAKKKEEEEEDEEDLNDNNYDEFSGYGGSLFSKDPYDKDDEEADAIYEAIDKRMDEKRK
EYREKRLREELERYRQERPKIQQQFSDLKRELVNVSEDDWKNIPEVGDARNRKQRNPRAE
RFTPLPDSVLARNLGGETSTSIDPSSGLASMMPGVATPGMLTPTGDLDLRKIGQARNTLM
NVKLNQVSDSVEGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPA
WIASARLEEVTGKVQAARNLIMKGCEVNPTSEDLWLEAARLQPPDTAKAVIAQSVRHIPT
SVRIWIKAADLEMEIKAKRRVYRKALEHIPNSVRLWKAAVELEEPEDARILLSRAVECCP
TSVDLWLALARLETYDNARKVLNKARENIPTDRQIWTTAAKLEEENGNKHMVEKIIDRAI
SSLSANGVEINREHWFKEAMEAEKAGAVHCCQVIVKAIIGFGVEEEDRKHTWMEDAETCA
QQGALECSRAVYAYALTTFPSKKSIWLRAAYFEKTYGTRESLEALLQRAVAHCPKSEVLW
LMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENSEYERARRLLAKARAS
APTPRVMMKSAKLEWALNNLDAALRLLKEALEAFDDFPKLWLMKGQIEEQQGYLDRAIET
YNQAIKKCPNSIPLWRLLAQLEHRKNQVTKARSVLEKARLKNPKNAELWVEAIRNELKSG
GPRDFSNMLIAKALQECPTSGFLWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKL
FWCERKISKCRDWFNRTVKIDPDLGDAWAYFYKFELLNGTEEQQEDVKKRCIVAEPHHGE
NWCKVSKNIANWCLSTDQILVKAAKELPIPT
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggcagtccctccggtttcgttaaatacgcgaaataaaaagcattttctgggtgtaccg
gcacctttgggatatgttgctggtgttggaagaggagctacaggatttacaacacggtct
gatatcggtcccgctcgagatgctaatgacgtttcagacgatagacacgctccacccgcg
aaacgtgctaaaaagaaggaagaagaggaagaggatgaagaagatttaaatgataataat
tacgatgaattctcaggatatggaggttccctattcagtaaggatccttacgataaagat
gacgaagaagcagatgcaatttatgaagctatcgataaacgtatggatgagaaacgtaag
gaatacagagaaaaacgtctcagggaagaattggaacgttatcgtcaagaacgtcctaaa
attcagcagcagttctcagatttgaaaagagaattggttaacgtgtctgaagacgattgg
aaaaatattcctgaagtaggagatgctagaaatcgtaaacagcgtaatccaagagcggaa
agatttaccccattaccagattctgtcttagcgaggaatttaggtggcgaaacatccact
agtattgatccatctagcggtttggcctctatgatgccaggtgtagcaacaccaggtatg
ctaactcccacaggggatctcgacctcaggaaaattggacaggccagaaatacattgatg
aacgtcaagctgaatcaagtttccgattctgtggagggccaaactgtagtcgatccaaaa
ggatatcttacagatttgcaaagcatgatacctacttatggcggtgacataaacgacata
aagaaagctagattattgttgaaatccgtcagagagactaatcctaatcatcctcctgcg
tggatcgcgtccgcgcgtttagaagaagtgacggggaaagttcaagcggcgagaaattta
ataatgaaaggttgcgaggtaaatcctacttctgaggatttatggttggaagctgcaaga
ctgcagccgccggacacggcgaaggcggtgatagcacaatcagtgcgacacattccgaca
tctgtcagaatctggataaaggccgcggatttggagatggagataaaagcgaaaagaaga
gtgtatcgaaaggccctggaacatattccgaattcagtgcgattatggaaagccgccgtc
gaattggaagagcccgaggacgcacgtattttgctcagtcgtgcggttgaatgttgtccg
actagtgtagatttatggctcgcactcgctagattagagacctacgacaatgcgagaaaa
gttttgaacaaggcccgagagaatatcccgacagacagacaaatttggactaccgccgcg
aaattggaagaggaaaacggcaataaacatatggtagagaagatcatcgatcgcgctata
tcttcgttgagtgcgaacggggtagagatcaacagggaacattggttcaaggaagcaatg
gaagctgaaaaggcaggagcggtgcactgttgtcaggttatcgtcaaagctattatcggt
tttggagtagaagaagaagatagaaagcatacttggatggaagatgcggaaacttgtgct
caacaaggggcattagaatgttcaagagctgtctacgcgtacgcattaacgacatttcct
agtaagaaatcaatttggttgcgcgcagcttatttcgaaaaaacatacgggacacgagaa
tctttggaagctttgttacaaagagcagtcgctcattgtccgaagagtgaagtgctctgg
ctcatgggtgctaaatccaagtggttggctggtgacgtgccagcagccagaggtatctta
tctctcgcatttcaagccaatccaaattccgaggagatttggctggcagcagtgaagctc
gaatccgaaaactcggaatacgagagagcgcgacgtttattggccaaggctagagcatcc
gctccgacaccgagagtgatgatgaaaagcgctaaactggaatgggctcttaataatttg
gatgctgcgttgcgtttacttaaggaagctctcgaagctttcgatgattttcctaaacta
tggctaatgaaaggtcaaatcgaggaacagcagggttatttagacagagcaatagaaaca
tataatcaagcgatcaaaaaatgtccaaattcgatacctctatggcgtctgctagcgcaa
ttggaacacaggaagaaccaagtgaccaaggcacgttcggttttggagaaagcccgactc
aaaaaccctaaaaatgcagaattatgggtagaggctatccgaaacgaattaaaaagcggt
ggccctcgcgatttttcaaatatgctaattgctaaagcgttacaagaatgtcctacatct
ggctttctttgggcggaggcaattttcctggaaccacgacctcaacggaaaactaagagt
gtggatgctcttaaaaaatgcgaacatgatcctcatgttcttttggcagtgtcaaaatta
ttttggtgcgaacgtaagatatcaaaatgcagagattggtttaatcgaacggtcaagata
gacccggatttaggagacgcgtgggcatatttctataagtttgaattattaaatggcacc
gaagaacagcaggaagatgtaaagaaaagatgtattgtcgcagaacctcatcacggtgaa
aattggtgtaaggtttccaaaaatatagcaaactggtgtttgagtacagatcagattcta
gtaaaggctgcaaaggagttacctattcctacataa
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