Polyergus mexicanus: 138939179
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Entry
138939179 CDS
T10742
Symbol
Fand
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pmec Polyergus mexicanus
Pathway
pmec03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmec00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138939179 (Fand)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmec03019
]
138939179 (Fand)
03041 Spliceosome [BR:
pmec03041
]
138939179 (Fand)
Messenger RNA biogenesis [BR:
pmec03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
138939179 (Fand)
Spliceosome [BR:
pmec03041
]
Complex B
Other components
Prp19-related factors
138939179 (Fand)
Complex C
138939179 (Fand)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
RPN7
Mad3_BUB1_I
PPR
TPR_10
NRDE-2
ARM_TT21
ARM_TT21_C
DHR-2_Lobe_A
Microp_apicomplexa_6
Motif
Other DBs
NCBI-GeneID:
138939179
NCBI-ProteinID:
XP_070162880
LinkDB
All DBs
Position
Unknown
AA seq
844 aa
AA seq
DB search
MEFVQSEDIDNEENLYAFNEEDLPYEEEILRNPFSVKHWQRYIDHLKNSKSKNLNVVYER
ALKELPGSYKLWYNYLRQRMSQLKDRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTL
MTEQCYVTRTRQVFDRSLRALPITQHHRIWPLYINFLKKHNVYETAVRVFRRYLKLAPED
TEEYIEYLISVGRLDEGAIKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPAKIKSLN
VDAIIRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAY
AQFEELSLKKLIEEAAKNPTEEDDIKLELRLARLEHLMERRLLLLNSVLLRQNPHNVAEW
HKRVKLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVAFGKFYEENGQIEDARVVFEK
ATHVPYTKVDDLASVWCEWAEIEIKHGNCKEALKLMHRATTMPARKVAYHDETETVQMRL
YKSLKVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRA
YEKGIALFKWPNVYDIWNTYLTKFLTRYGGTKLERTRDLFEQCLEHCPPKYAKALYLLYA
KLEEEHGLARHAMSVYERATNAVLPEEKFDMFNIYIKKAADIYGVPKTRQIYEKAIEVLN
DENTREMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSNFWQIWKEFEVRHGNEDTM
REMLRIKRSVQAMYNTQVNMMSAQMLNNASNQILDVPMDAMRLLDSKITDNAANMRKGIK
FVRGVTEKDGKPESSVNNPDEIDIDIDDENEENDEEIEEDVPIEKRTIPSQVFGSLKTVE
VEND
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggagtttgtgcagtctgaagatatagataacgaagaaaatttatatgcctttaatgaa
gaggatttaccatacgaggaagaaattttacgaaatccattttcagttaaacattggcaa
cgctatatcgatcacctaaaaaattcaaagagtaagaatttaaatgtggtgtatgaacga
gcattgaaagaacttccaggcagttataagttatggtataattatcttcgacaacgtatg
agccagttaaaagatcgatgtataacagatccgttatatgaagatgttaataatgcattt
gaacgtgctttggtatttatgcataaaatgccacgcatatggatggactattgtacacta
atgactgaacaatgttatgtaacacgaacacgtcaggtatttgatcgttctcttagagca
cttcctatcactcaacatcatcgtatatggccattatatattaatttcttaaagaaacat
aatgtttatgagactgctgtcagggtcttcagaagatatttaaagttggcaccggaagat
acagaagaatatatcgaatatctaatatcagttggtagacttgatgagggtgctataaaa
cttgcacagattgtcaatcaagatgattttgtatcaaaacacggaaaatctaatcatcaa
ttatggaatgaattatgtgatttaatatcaaaaaatcctgctaaaataaagtccctgaat
gtagatgctattattagaggtggattaagacgttatacagatcaattgggacctttatgg
aattcactagcagattactatgtccgaagcggtctctttgaaagggcaagagatatttat
gaagaagctatacaaactgttactactgtcagagattttactcaagtttttgatgcttat
gcacaatttgaagaacttagtcttaaaaaacttatagaagaagcagcaaaaaatcccact
gaagaagatgatataaaattagaattgagactagcacgattggaacatcttatggaaaga
agattattgttactcaattctgtattattacgacaaaatccacataatgtagcagaatgg
cacaaaagagttaagctttatgaagggcaaccacatgagataattaatacatacacagaa
gcagtgcagacagtgcaaccacaattggcagttggtaaattgcatacattgtgggttgca
tttggcaaattttatgaggaaaatggacaaatagaagatgctagagttgtatttgaaaag
gcaactcatgttccgtatactaaagtagatgatcttgcttctgtgtggtgtgaatgggca
gaaatagaaattaaacatggaaattgtaaagaagctttaaaactcatgcatcgtgctact
acaatgccagctagaaaagtggcatatcatgatgaaacagaaacagtgcaaatgagatta
tacaaatccttaaaagtatggtctatgtatgcagatttagaagaaagttttggaacattt
aagacttgtaaagcagtatatgacaaaataatcgacttgaaaattgcaactcctcaaatt
atcattaattatggactctttctagaagaaaacaactactttgaggaagcgtttagagca
tatgaaaaaggtattgcattgtttaagtggcctaatgtctatgatatttggaatacatat
ctcacaaaatttttgactcgttatggtggtacaaaattagaacgtaccagggatctattt
gagcaatgtttagaacattgtccaccaaaatatgccaaagccttatatttattgtatgca
aaattagaagaagaacatggcttagcaagacatgctatgtctgtgtatgaacgagcgaca
aatgctgttcttccagaagagaaatttgatatgtttaatatatatataaagaaagctgca
gacatatatggagtgccaaaaactcgacagatatacgaaaaggccatagaagtcttaaat
gatgagaatactagagaaatgtgtttacgattcgcagaaatggagaccaaattaggagaa
gtagacagagcgagagcgatatacgcacattgtagtcaaatatgtgatccaagggtcaca
tcaaacttctggcaaatttggaaagaatttgaagttaggcatggaaacgaggatacaatg
cgtgaaatgcttcgaattaagcgtagtgtgcaagctatgtataatactcaagtaaatatg
atgtctgcacaaatgttgaataatgcgtctaaccaaatattagatgttccaatggatgct
atgcgcttgttagatagtaaaatcacagacaatgctgctaatatgagaaaaggtattaag
tttgtacgtggtgtaacagaaaaagacggtaaaccagaatcttctgtaaataatccagat
gagattgatatcgatatagatgacgaaaatgaagaaaatgatgaagaaatagaagaagat
gtaccgattgaaaaacgaactataccatcacaagtatttggtagtttaaaaacagttgaa
gttgaaaatgattaa
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