KEGG   Polyergus mexicanus: 138940315
Entry
138940315         CDS       T10742                                 
Symbol
U4-u6-60k
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pmec  Polyergus mexicanus
Pathway
pmec03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pmec00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    138940315 (U4-u6-60k)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pmec03041]
    138940315 (U4-u6-60k)
Spliceosome [BR:pmec03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    138940315 (U4-u6-60k)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st PRP4 ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_EML Beta-prop_EIPR1 NBCH_WD40 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_SPT8 Ge1_WD40 Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_Nup120_160 WD40_like Beta-prop_NWD2_C Beta-prop_SCAP Nbas_N
Other DBs
NCBI-GeneID: 138940315
NCBI-ProteinID: XP_070165201
LinkDB
Position
Unknown
AA seq 526 aa
MSDDEDLVYVKKQKTVHYGSLEEAERARLAALQVAVETTDEEKDITNANDINNVFNLVGN
VHISNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDFEVKKHLRQLGEPICLFGEG
PADRRTRLRELLASVGEDAIKKKHEEEEKPLHTVEKDTETTWYHEGPESLRIARSWIASY
SLPRAKARLNEARQDLELPTATRTAKRQELLKKLQALSIYCSQLGDTRPISFCQFSPNSK
ILATASWSGLCKLWSVPDCTLLRTLKGHTCNVGCIIFHPKATITEDVIGDNAGQTCMLAS
CASDGTVKLWGGGNGEEPLAEVEGHEPHRVSRIAFHPSGRFLGTCCYDASWRLWDLEQQA
EVLHQEGHSRAVHCISFQCDGSVCATGSHDSFGRVWDLRTGRCIMFMEGHLTSIYGVDFS
PNGFHIATASEDNTCKIWDLRKRTCIYTIPAHTSLLSDVKYQRIEGQYLVTASYDNTAKI
WSNKTWQPLKVLPGHDGKVMSVDVSPDHKYIATTSYDRTFKLWAPE
NT seq 1581 nt   +upstreamnt  +downstreamnt
atgtccgacgacgaggatctggtttacgtgaagaaacagaagaccgttcattatggctcg
ctggaagaggcggaacgtgcacgtcttgcagctttgcaagttgctgtcgaaactacagac
gaagagaaggatatcacaaatgcgaatgatatcaacaatgttttcaacttggtcggcaat
gtgcacatttcaaacgagtatatggaactcgaggatgagatgtccaaagatcgccaggca
ttattggaagaattcgaacgtaggaaaaaggccagacagattaatgtttccacagatgat
ttcgaggtaaagaaacacttgagacaattgggtgaaccaatttgtctctttggcgaaggc
cctgcagacagaagaacaagattaagagaattgttagccagtgtaggggaggacgctata
aaaaagaagcacgaagaagaggagaaaccacttcatacagttgaaaaggatacggagaca
acttggtatcacgagggcccagaatctttgcgaattgcacgatcgtggatagcatcatat
tcattgcccagagcaaaggcgcgattgaacgaggccagacaagatctagaattaccaact
gcgactcgtacagcgaaaagacaagaacttttgaagaagttgcaagcattgagcatttat
tgctctcaactcggggacacgaggccgatttctttttgtcagtttagccctaattcaaag
attcttgctaccgcatcatggtcaggcttgtgcaagttatggtctgtacctgactgtact
ttgttgcgcactttaaaaggacatacttgtaatgttggctgtattatttttcatccaaaa
gctacgataaccgaagatgtgataggtgataatgcaggacagacttgcatgctggcatct
tgcgcatcagatggtactgtgaaattgtggggcggaggcaatggcgaagaaccactggcg
gaagtagaaggacacgagcctcatagagtttctaggatagcgtttcatccgtccggacga
tttcttggcacgtgttgctacgacgcatcttggcgattgtgggatttagagcagcaagca
gaggtacttcatcaagaaggtcactctagagctgtacattgtattagctttcagtgcgac
ggaagcgtttgcgctacaggcagtcacgattctttcggtagagtatgggatttgcgtacc
ggtagatgcataatgtttatggagggtcatctaacatccatctatggcgtcgatttctcg
ccgaatggttttcatatagcgacggcgagtgaagataacacttgcaagatatgggacttg
cgaaagaggacctgcatatacacgataccggcgcataccagcttgttgtccgatgtgaaa
taccagagaatagaaggacaatatttagttaccgcgtcttacgacaacacagccaaaatc
tggtccaataaaacgtggcaaccgctcaaggtgttaccaggtcatgatggaaaagtcatg
tccgtcgatgtgtctcccgatcacaaatatatcgcgactacttcgtacgacagaactttt
aaattatgggctccagaataa

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