KEGG   Polyergus mexicanus: 138940887
Entry
138940887         CDS       T10742                                 
Symbol
Gnf1
Name
(RefSeq) replication factor C subunit 1 isoform X1
  KO
K10754  replication factor C subunit 1
Organism
pmec  Polyergus mexicanus
Pathway
pmec03030  DNA replication
pmec03410  Base excision repair
pmec03420  Nucleotide excision repair
pmec03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pmec00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    138940887 (Gnf1)
   03410 Base excision repair
    138940887 (Gnf1)
   03420 Nucleotide excision repair
    138940887 (Gnf1)
   03430 Mismatch repair
    138940887 (Gnf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pmec03032]
    138940887 (Gnf1)
   03400 DNA repair and recombination proteins [BR:pmec03400]
    138940887 (Gnf1)
DNA replication proteins [BR:pmec03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    138940887 (Gnf1)
DNA repair and recombination proteins [BR:pmec03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     138940887 (Gnf1)
SSDB
Motif
Pfam: RFC1 AAA BRCT AAA_30 Rad17 AAA_22 AAA_14 RuvB_N AAA_5 BRCT_2 AAA_17 AAA_33 AAA_16 RNA_helicase PTCB-BRCT AAA_6 NTPase_1 AAA_19 MGS AAA_18 AAA_assoc_2 Viral_helicase1
Other DBs
NCBI-GeneID: 138940887
NCBI-ProteinID: XP_070166240
LinkDB
Position
Unknown
AA seq 1032 aa
MPRDIRSYFTSVATSQKKNSEPLASKSQKRRVISSDEDEEKSKSSAKRTKIVRKKTTKVS
VLSDSDDDTTVKNNKKELTKSETSKKNESETISFGELFGKRPIMRVEETKVSQKLQKLES
EFHNDDDFDAILKQLDTSQDVIIQDTKKDKDGIENANISENSDETFKTEIISIKSKKHTY
LKNNKTNMTKIKEMKKSPSKNNVHSKMITLPSKEKLKMKKDSSSSNEDLDNNKYSDDKSK
KLNLNNLTINISRPVSATKENGIKKQSPDKKKAKMVDLFEERIEKKKQRTAMYEKYLQRG
GARNPGSKEIPIGAQNCLAGISFVLTGVLDSLERNEVEDLIRKYGGRTVNTVSGKVNYII
VGDEAGPSKLAKANNLGIKQISEDNLLEMIRTRSEGKAKDIKPVITKAKSNVKKILNTFE
EDKSLLTEKTKSTVTDLYDLSEKIKSPLCSPVKMKTSSLIPKQTIDAINYSQETTTSIGS
QPLVEKYRPKTMKQIIGQQGDKSCAHNLYVWLRDWYKNRQDPKFKNSNSKQTHGQSFKAA
LLSGPPGVGKTTSVQVVCKELGYDLVEFNASDTRNKTLLKEEVSGLLSNTTMKDYITEGT
KRKITSKHVLLMDEVDGMAGNEDRGGLQELLNLIKNTQVPIICICNDRFNTRVKTISIHS
YELRFHKLRVEQIRSSMLSLCFKEKIDISTEDLNRLIESTNYDIRQVINHLEFLGGRTPH
VETTKRKHSNKNFKLGPFDVVKVAFNAEEQKNMSLNDKIDLYFHDYNIAPLFVEENYLSV
RLSQIPLLQRLDKIVQAADSISQGDLVEKAMRSNMMWSLLPLHACFSFVIPTSEMSGSLD
SLVRFPGWFGRNSKTTRFNRLMQELTMHTRLATGANKDALNMDYLVHIRNAIIKPLIDNG
VNGIEAAINIMGKYYLTREDLNSIIEISLWPGIRDPTSNLDSKVKAAFTRAYQKNPPMFP
YTINSNITTKKRSMHNENLIEEDDEEEEDDSIESDTMIKAKKPAASTSKATASTKRSGEP
VKKRVKGRDKPK
NT seq 3099 nt   +upstreamnt  +downstreamnt
atgccgcgggatataaggtcctattttacgtcggttgcaacttctcagaaaaagaatagc
gagccccttgcttcaaagtcccaaaagaggcgtgtaatttcgtcagacgaagatgaagag
aagtcgaagtcatctgcaaaacgcacgaagattgtacgaaaaaaaacgacaaaagtttct
gtcttatctgactctgatgatgatacaactgtgaagaacaataagaaagagcttacaaaa
tcagaaacaagtaagaaaaatgaaagtgaaacaatctcttttggcgaactgtttggtaaa
aggccaataatgagagtagaagaaacaaaagtaagccaaaaactacagaaactggaatct
gaatttcacaatgatgatgattttgatgctatacttaaacaattggacacttcacaggat
gtgataatacaggatacaaaaaaagataaggatggcattgaaaatgcaaatatttccgaa
aattctgatgaaacgtttaaaacagagataatttcaattaaaagcaagaaacatacttat
ttgaaaaataataaaacaaacatgacaaaaattaaagagatgaaaaaatctcctagtaaa
aataatgtacattcaaaaatgattactcttccttcaaaagagaaattaaaaatgaaaaaa
gacagctctagctctaatgaagatttagataataataaatatagtgatgacaaatcaaaa
aaattaaacttgaacaatttaacaataaatatctcaagacctgtttctgctacaaaagaa
aacggcataaaaaaacaatcgccagacaaaaagaaagccaagatggtggatttatttgaa
gaaagaatagaaaagaagaaacagcgtactgcaatgtatgaaaaatatcttcagagaggc
ggcgccagaaatccaggttcaaaagagattcctataggtgctcaaaactgtttagctggt
ataagttttgtgctaactggtgttttggattctctggaaagaaatgaagttgaggattta
atacgcaaatacggcggtcgtactgtgaacactgtttcgggcaaagttaactatattata
gtaggagatgaggctggtccatcaaaattggcaaaagccaataatctgggtattaagcaa
atatctgaggacaatctcctggaaatgatccgcacaagatcggaaggtaaagctaaagat
attaaaccagttataacaaaggcgaaatcaaacgtgaaaaaaatattgaatacatttgag
gaagataaatcactattaacagagaaaacaaaatcaacagtaacagatttatacgatctt
tctgaaaagataaaatcaccgctatgttcacctgtgaaaatgaaaacatcatcattgata
ccaaagcagacaatagatgcaatcaattattcacaagagacaactacaagcatcgggtca
caaccattagttgaaaaatatagacctaaaactatgaagcagattataggacagcaagga
gataagagctgtgcacacaacttgtatgtgtggttgcgcgattggtataagaatcgccaa
gatccgaagtttaaaaacagcaatagtaaacaaactcatgggcaaagttttaaagctgct
ttgttgtcgggaccaccaggtgttggtaaaacaacaagtgtgcaggttgtttgtaaagaa
ttggggtacgatcttgtagaattcaatgcttctgacacgagaaacaagacacttctgaaa
gaagaagtctcaggattattatccaatactacaatgaaagattacatcactgagggtact
aaacgaaagatcacaagcaagcatgtactgttgatggatgaagtcgatggcatggctggt
aacgaggatcgcggtggtttacaagaactacttaatttaataaaaaatacccaagtgcca
attatttgtatttgcaatgaccgattcaacacaagggtgaagaccatttccatacatagc
tacgagctgagatttcacaagctcagagtggagcagatcaggagctccatgctgtctcta
tgctttaaagagaaaattgacatatcgacagaggatctcaatcgtctaatcgagtcgaca
aattacgatattcgacaagtgataaaccatctcgagttcctcggtggtcgtacacctcac
gtggagacgactaagaggaaacattcgaataagaatttcaaactcggaccattcgacgtt
gtgaaagtggcatttaacgcggaagagcaaaaaaatatgagtctgaatgataagattgat
ttatatttccacgattacaacatagcgcctctttttgtagaagaaaattacctgagtgtc
agattatcccaaataccacttcttcagaggctggacaagatcgttcaagcggccgacagt
atatcccaaggagatctcgtcgagaaggcgatgagaagcaatatgatgtggagtctactt
ccattgcacgcatgtttctcattcgttattccaactagcgaaatgtcggggagtcttgat
tcgttggtacgttttccgggctggtttgggcgaaattccaagacgacgcgatttaataga
ttaatgcaagaattaacgatgcatacgcgattagccacgggcgcgaacaaagatgctctg
aatatggattatttggttcatattcggaacgcaattataaaacctctaatagataatggt
gtgaacggtattgaagcagcaataaatattatgggaaaatattatctaacgagagaggac
ttgaattcaataatagagatttctctctggccgggaatccgcgatcctacgagtaatctt
gatagcaaagtgaaagcagcgtttacacgagcgtatcaaaagaatcctcctatgttccca
tatacaattaatagtaatattacaacaaagaaaagatccatgcataatgaaaatcttata
gaagaggatgatgaagaagaagaagatgacagtattgaatccgacacaatgatcaaggca
aagaaacctgctgctagtactagtaaagccactgcatcgacgaaaagaagcggcgaaccg
gttaaaaaacgtgtaaagggacgcgataaacctaaataa

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