Polyergus mexicanus: 138940887
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Entry
138940887 CDS
T10742
Symbol
Gnf1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
pmec Polyergus mexicanus
Pathway
pmec03030
DNA replication
pmec03410
Base excision repair
pmec03420
Nucleotide excision repair
pmec03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
138940887 (Gnf1)
03410 Base excision repair
138940887 (Gnf1)
03420 Nucleotide excision repair
138940887 (Gnf1)
03430 Mismatch repair
138940887 (Gnf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmec03032
]
138940887 (Gnf1)
03400 DNA repair and recombination proteins [BR:
pmec03400
]
138940887 (Gnf1)
DNA replication proteins [BR:
pmec03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
138940887 (Gnf1)
DNA repair and recombination proteins [BR:
pmec03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
138940887 (Gnf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
AAA
BRCT
AAA_30
Rad17
AAA_22
AAA_14
RuvB_N
BRCT_2
AAA_5
AAA_16
AAA_17
AAA_33
RNA_helicase
PTCB-BRCT
AAA_6
NTPase_1
AAA_19
AAA_assoc_2
MGS
AAA_18
Viral_helicase1
Motif
Other DBs
NCBI-GeneID:
138940887
NCBI-ProteinID:
XP_070166240
LinkDB
All DBs
Position
Unknown
AA seq
1032 aa
AA seq
DB search
MPRDIRSYFTSVATSQKKNSEPLASKSQKRRVISSDEDEEKSKSSAKRTKIVRKKTTKVS
VLSDSDDDTTVKNNKKELTKSETSKKNESETISFGELFGKRPIMRVEETKVSQKLQKLES
EFHNDDDFDAILKQLDTSQDVIIQDTKKDKDGIENANISENSDETFKTEIISIKSKKHTY
LKNNKTNMTKIKEMKKSPSKNNVHSKMITLPSKEKLKMKKDSSSSNEDLDNNKYSDDKSK
KLNLNNLTINISRPVSATKENGIKKQSPDKKKAKMVDLFEERIEKKKQRTAMYEKYLQRG
GARNPGSKEIPIGAQNCLAGISFVLTGVLDSLERNEVEDLIRKYGGRTVNTVSGKVNYII
VGDEAGPSKLAKANNLGIKQISEDNLLEMIRTRSEGKAKDIKPVITKAKSNVKKILNTFE
EDKSLLTEKTKSTVTDLYDLSEKIKSPLCSPVKMKTSSLIPKQTIDAINYSQETTTSIGS
QPLVEKYRPKTMKQIIGQQGDKSCAHNLYVWLRDWYKNRQDPKFKNSNSKQTHGQSFKAA
LLSGPPGVGKTTSVQVVCKELGYDLVEFNASDTRNKTLLKEEVSGLLSNTTMKDYITEGT
KRKITSKHVLLMDEVDGMAGNEDRGGLQELLNLIKNTQVPIICICNDRFNTRVKTISIHS
YELRFHKLRVEQIRSSMLSLCFKEKIDISTEDLNRLIESTNYDIRQVINHLEFLGGRTPH
VETTKRKHSNKNFKLGPFDVVKVAFNAEEQKNMSLNDKIDLYFHDYNIAPLFVEENYLSV
RLSQIPLLQRLDKIVQAADSISQGDLVEKAMRSNMMWSLLPLHACFSFVIPTSEMSGSLD
SLVRFPGWFGRNSKTTRFNRLMQELTMHTRLATGANKDALNMDYLVHIRNAIIKPLIDNG
VNGIEAAINIMGKYYLTREDLNSIIEISLWPGIRDPTSNLDSKVKAAFTRAYQKNPPMFP
YTINSNITTKKRSMHNENLIEEDDEEEEDDSIESDTMIKAKKPAASTSKATASTKRSGEP
VKKRVKGRDKPK
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgggatataaggtcctattttacgtcggttgcaacttctcagaaaaagaatagc
gagccccttgcttcaaagtcccaaaagaggcgtgtaatttcgtcagacgaagatgaagag
aagtcgaagtcatctgcaaaacgcacgaagattgtacgaaaaaaaacgacaaaagtttct
gtcttatctgactctgatgatgatacaactgtgaagaacaataagaaagagcttacaaaa
tcagaaacaagtaagaaaaatgaaagtgaaacaatctcttttggcgaactgtttggtaaa
aggccaataatgagagtagaagaaacaaaagtaagccaaaaactacagaaactggaatct
gaatttcacaatgatgatgattttgatgctatacttaaacaattggacacttcacaggat
gtgataatacaggatacaaaaaaagataaggatggcattgaaaatgcaaatatttccgaa
aattctgatgaaacgtttaaaacagagataatttcaattaaaagcaagaaacatacttat
ttgaaaaataataaaacaaacatgacaaaaattaaagagatgaaaaaatctcctagtaaa
aataatgtacattcaaaaatgattactcttccttcaaaagagaaattaaaaatgaaaaaa
gacagctctagctctaatgaagatttagataataataaatatagtgatgacaaatcaaaa
aaattaaacttgaacaatttaacaataaatatctcaagacctgtttctgctacaaaagaa
aacggcataaaaaaacaatcgccagacaaaaagaaagccaagatggtggatttatttgaa
gaaagaatagaaaagaagaaacagcgtactgcaatgtatgaaaaatatcttcagagaggc
ggcgccagaaatccaggttcaaaagagattcctataggtgctcaaaactgtttagctggt
ataagttttgtgctaactggtgttttggattctctggaaagaaatgaagttgaggattta
atacgcaaatacggcggtcgtactgtgaacactgtttcgggcaaagttaactatattata
gtaggagatgaggctggtccatcaaaattggcaaaagccaataatctgggtattaagcaa
atatctgaggacaatctcctggaaatgatccgcacaagatcggaaggtaaagctaaagat
attaaaccagttataacaaaggcgaaatcaaacgtgaaaaaaatattgaatacatttgag
gaagataaatcactattaacagagaaaacaaaatcaacagtaacagatttatacgatctt
tctgaaaagataaaatcaccgctatgttcacctgtgaaaatgaaaacatcatcattgata
ccaaagcagacaatagatgcaatcaattattcacaagagacaactacaagcatcgggtca
caaccattagttgaaaaatatagacctaaaactatgaagcagattataggacagcaagga
gataagagctgtgcacacaacttgtatgtgtggttgcgcgattggtataagaatcgccaa
gatccgaagtttaaaaacagcaatagtaaacaaactcatgggcaaagttttaaagctgct
ttgttgtcgggaccaccaggtgttggtaaaacaacaagtgtgcaggttgtttgtaaagaa
ttggggtacgatcttgtagaattcaatgcttctgacacgagaaacaagacacttctgaaa
gaagaagtctcaggattattatccaatactacaatgaaagattacatcactgagggtact
aaacgaaagatcacaagcaagcatgtactgttgatggatgaagtcgatggcatggctggt
aacgaggatcgcggtggtttacaagaactacttaatttaataaaaaatacccaagtgcca
attatttgtatttgcaatgaccgattcaacacaagggtgaagaccatttccatacatagc
tacgagctgagatttcacaagctcagagtggagcagatcaggagctccatgctgtctcta
tgctttaaagagaaaattgacatatcgacagaggatctcaatcgtctaatcgagtcgaca
aattacgatattcgacaagtgataaaccatctcgagttcctcggtggtcgtacacctcac
gtggagacgactaagaggaaacattcgaataagaatttcaaactcggaccattcgacgtt
gtgaaagtggcatttaacgcggaagagcaaaaaaatatgagtctgaatgataagattgat
ttatatttccacgattacaacatagcgcctctttttgtagaagaaaattacctgagtgtc
agattatcccaaataccacttcttcagaggctggacaagatcgttcaagcggccgacagt
atatcccaaggagatctcgtcgagaaggcgatgagaagcaatatgatgtggagtctactt
ccattgcacgcatgtttctcattcgttattccaactagcgaaatgtcggggagtcttgat
tcgttggtacgttttccgggctggtttgggcgaaattccaagacgacgcgatttaataga
ttaatgcaagaattaacgatgcatacgcgattagccacgggcgcgaacaaagatgctctg
aatatggattatttggttcatattcggaacgcaattataaaacctctaatagataatggt
gtgaacggtattgaagcagcaataaatattatgggaaaatattatctaacgagagaggac
ttgaattcaataatagagatttctctctggccgggaatccgcgatcctacgagtaatctt
gatagcaaagtgaaagcagcgtttacacgagcgtatcaaaagaatcctcctatgttccca
tatacaattaatagtaatattacaacaaagaaaagatccatgcataatgaaaatcttata
gaagaggatgatgaagaagaagaagatgacagtattgaatccgacacaatgatcaaggca
aagaaacctgctgctagtactagtaaagccactgcatcgacgaaaagaagcggcgaaccg
gttaaaaaacgtgtaaagggacgcgataaacctaaataa
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