Polyergus mexicanus: 138942587
Help
Entry
138942587 CDS
T10742
Symbol
Dnalig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pmec Polyergus mexicanus
Pathway
pmec03030
DNA replication
pmec03410
Base excision repair
pmec03420
Nucleotide excision repair
pmec03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
138942587 (Dnalig1)
03410 Base excision repair
138942587 (Dnalig1)
03420 Nucleotide excision repair
138942587 (Dnalig1)
03430 Mismatch repair
138942587 (Dnalig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmec03032
]
138942587 (Dnalig1)
03400 DNA repair and recombination proteins [BR:
pmec03400
]
138942587 (Dnalig1)
Enzymes [BR:
pmec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
138942587 (Dnalig1)
6.5.1.6 DNA ligase (ATP or NAD+)
138942587 (Dnalig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
138942587 (Dnalig1)
DNA replication proteins [BR:
pmec03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
138942587 (Dnalig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
138942587 (Dnalig1)
DNA repair and recombination proteins [BR:
pmec03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
138942587 (Dnalig1)
NER (nucleotide excision repair)
Other NER factors
138942587 (Dnalig1)
MMR (mismatch excision repair)
Other MMR factors
138942587 (Dnalig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
138942587
NCBI-ProteinID:
XP_070169024
LinkDB
All DBs
Position
Unknown
AA seq
1000 aa
AA seq
DB search
MAQRRIDSFFTKISSKKENSSEDYSESLSLDKLIMLKILATCSRLSSLSLPVRHFELAST
THSRFVVVFNWIHATNSNNLSDKEKNSPGSSKRKRDDSNRVASSPSSKKTDNKLTKPKAI
SKTPSPSAKPRAKQSNYTAELLYMEGVIYYNFLGTTPKSKSNKLLPEPPNKKRKLANTPK
KEEEDELKNVNGAEIVKNTQVENDTVENEQEKEESISPEKKFGSDEAKKTKNIVKKKRAR
IIELVDSSDDEDHLLLPESPKKLEINGERKKIESTDECSKMKKNASDDETNQNVLDIKGK
TEILKKEPTPEKKSKTTSKKMHNFFTSKQKNDAKDNKANNAKSSNQSYNPNISDYHPINN
ACWKREDKTPYNAFTRTLELIEETSARLKIIEILSNYFRSVIVLSPIDLLPSVYLCLNQL
APAYEGIELGVADTNLMKAIAQCTGRTLAQIKADVQEVGDLGIVAEGSRSNQRTMFQPAP
LTVPIVYSKLKEIAQMTGHASLTKKLDKIQTLFVACRNTEARYLIRSLAGKLRIGLAEQS
VLQALALACVMTPPEQDYPPEILNANKKMSSDRFKEKYDEIALILKTTYCECPNYNLIIP
VLLEDGINALPTKCKLTPGIPLKPMLAHPTKGVQEVLTRFEGLKFTCEWKYDGERAQIHV
ADNGQVNIYSRNQENNTSKYPDIIKRFKNTRGDLVKNCILDCEAVAWDNEQKQILPFQIL
STRKRKDANEEDIKVQVCVFMFDLLYLNNESLVKKPFATRRELLKQHFKEIEGEWKFANS
MDTTTMEEVQVFLDESVKGNCEGLMVKTLEEDATYEIAKRSRNWLKLKKDYLDGVGDTLD
VVVIGGYIGKGKRTGTYGGFLLACYDQENEEYQSICKIGTGFKEEDLENHTKFLKDHVIP
QTKSYYRFDSSHEPDHWFEPVQVWEIKCADLSLSPVHRAAIGIVDPEKGISLRFPRFIRI
REDKNCEEATSAQQVADMYNNQEQIKNKTSASKATEEDFY
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaacgtcgtatagactctttcttcacgaaaatatcgtccaagaaagagaattcg
agcgaggattactcagagagtctgtctctagataaattgattatgctaaaaatcctcgcc
acttgttcgcgtttgagctcgctgtctttaccggttcgacatttcgagctcgcgagcaca
actcatagtcgatttgttgtcgtttttaattggatacatgcaaccaacagcaataacttg
tccgacaaggaaaagaattcaccgggaagcagcaaacggaagagagatgacagcaataga
gttgctagttctccctcttccaagaagacagacaacaaacttacaaagccaaaagcaatt
tcaaagactccttctccaagtgcaaagcctcgtgcaaagcaaagtaattatactgctgaa
ctattgtatatggaaggtgttatatattataattttttaggaaccactccaaaaagtaag
tcgaataaacttttacctgaaccaccaaataaaaagaggaaactggcaaacactccaaaa
aaggaagaggaagatgaacttaaaaatgttaatggagctgagatagtgaaaaatactcaa
gtagaaaatgatacagttgaaaatgaacaagaaaaagaagaatccatttctccagaaaaa
aaatttggttctgatgaggcaaaaaaaacaaagaatattgtgaaaaagaaacgagccaga
ataatcgaattagtagattccagtgacgatgaggatcatctactgttacctgaaagtcca
aaaaaattagagattaatggcgaaagaaagaagattgaaagcacagacgaatgtagtaaa
atgaaaaagaatgcatcagatgatgaaacaaatcaaaatgttttggatatcaaggggaag
actgaaatcctgaagaaggaacctacaccagaaaagaagtcaaagactacttctaagaaa
atgcataactttttcacatctaagcaaaagaatgacgcaaaggataacaaagcaaataat
gcaaaaagcagtaaccagtcttacaatcctaacatatctgattatcatccaataaacaat
gcatgctggaaacgagaagacaaaactccatataacgcctttacgcgcactttggagctt
atcgaagaaacgagcgcgaggttgaagataatagaaatactgtcaaattactttcgatct
gtcatcgtcctgagccctatagatcttttgccaagcgtatatctgtgccttaatcaatta
gcaccagcatacgaaggaattgagcttggcgttgctgatacgaacctgatgaaagcgata
gcacaatgcactggtaggacgttggcgcaaattaaagccgatgtccaggaggttggcgat
ttgggaattgtagcagaaggtagcagatccaaccagagaactatgtttcaaccggcaccg
ttgacagttcccattgtatactccaaattaaaggagattgcccagatgacgggccacgcg
tctctgacgaaaaaattagacaagattcaaacactgtttgtggcatgtcgtaatacggaa
gcaagataccttattagatcgttggccggaaagcttcgcatcggtttggccgaacaatct
gttttgcaagcattggctttagcttgtgtcatgacaccgccagaacaggattatccacca
gaaatcttaaacgcgaacaagaaaatgtcaagcgatcgttttaaagagaaatacgacgaa
atagcacttatactaaagacaacgtattgtgaatgtccgaactataatcttataattccc
gttttgctggaagatggaatcaatgccttgccaactaaatgcaaactcactcctggaata
cctttgaaacctatgttggcgcatcctaccaagggtgttcaagaagtcctgacacgattt
gaaggtttaaaattcacatgcgagtggaaatatgatggagagagagcacagatacacgtc
gcggataacggccaagtcaatatctacagtagaaatcaggaaaacaatactagtaagtac
ccggatatcattaaacgatttaagaacactcgtggtgatttagtgaagaattgcatactt
gattgtgaggcggtcgcctgggacaatgagcagaaacagattcttccgtttcaaatactc
agtacgagaaagcgaaaggatgccaatgaggaagatattaaagtgcaggtatgtgtattt
atgttcgatttgttatacctaaacaacgagtcgttggtaaagaaaccctttgcaacgcgt
cgcgagttgctgaagcagcattttaaggagatagaaggcgaatggaaatttgccaatagt
atggacactacaacgatggaggaggtacaagtcttcttggacgaatctgtgaagggtaac
tgtgagggtttaatggtgaagacactggaggaggatgcaacctatgagatcgcaaagcga
tcgagaaattggttgaagctgaaaaaagattacttggacggtgtgggtgatacgctagat
gtggttgtaatcggtggttacatcggcaaaggaaagagaacaggcacttatggtggcttc
ctcttggcttgttacgatcaagaaaacgaggagtaccagagcatttgtaaaatcggcaca
ggcttcaaagaggaagatcttgagaatcatacaaagttcttgaaagatcatgtcataccc
cagacgaaatcgtactatcgttttgacagcagccatgagcccgatcattggtttgaacca
gtacaagtgtgggagattaaatgcgccgatctctccctatcgccagttcacagggcagct
atcggaatagttgatccggaaaagggtatatccttaaggtttccgcgatttatcaggata
cgcgaagataaaaattgtgaagaggccacttctgctcaacaagtggcagatatgtacaat
aatcaagaacagatcaaaaataaaacttcggcatcgaaagctacggaggaagatttctac
taa
DBGET
integrated database retrieval system
