Polyergus mexicanus: 138943419
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Entry
138943419 CDS
T10742
Symbol
Patr-1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pmec Polyergus mexicanus
Pathway
pmec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138943419 (Patr-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmec03019
]
138943419 (Patr-1)
Messenger RNA biogenesis [BR:
pmec03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138943419 (Patr-1)
mRNA degradation factors
5'-3' decay
Decapping complex
138943419 (Patr-1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
138943419
NCBI-ProteinID:
XP_070170374
LinkDB
All DBs
Position
Unknown
AA seq
724 aa
AA seq
DB search
MADSFFGFDTTLGDNNLEDGLDCPLEEDEFEEEYDALNDETFGPDAAIGDWEEDHEKLAE
ITESNRPQNQNATSKKNISNIDIEDNLSHLVLDKEGIVPRPGVWGSPLNLSPPKAQPRLS
LPTLKNACTVEELERGLVANRPPPGLSKPQTQQQQKKSEGSLLFEALSLNEKFQVNGLPP
TRFPPGLGLPGAHPIVLPNIRVPHPQLMQPPRLLGLINQTGNMLRYPLPPHLMLSQPVPR
QPLHGSYSFPQPPHPNLGGPQFLRPDHMMSAFPNNQANHHQQHQHPYLGNQRNQNRSYYH
NDQQPGHQPFFKNNQYPQRSHDRTNQRYYHQHYSHGVNGNASGEYELSGKLAIKAHEKHW
LINIQLLQLNTIQPYVDDHYYIVFCDKRNKRHANQEQKDKKHHNTNGYHRDHRDWEPTSQ
APSRSAYTPAQFENSLGKLHCSSVTAPRKLIDMDVVSNSDSQSNSQSQQKDTKKTRQLLL
EIERLYTLLFKLEDLSNPLASIPEPQQQQEGEVETNTIKTKPELISMTLSCLQQLIQDDK
LASMLSIRKGKTLLLRFLPHLNVTEYNKQLKELWTAIFKGLAVIGRRDCHLLTDFYSEFW
RWLNTVKDFDTVLRLARALSDSATHPVKNNSLSFALMNKFGISAIAAMLEQAEQLCATND
SLPSEWSTFIEMIVEIIGGSSSCITPCQPIAAMTLNKHLNRISSLKIERYTTLVRLLTDT
NPLR
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggcagactcttttttcggtttcgataccacgctcggagacaacaatttagaagatgga
ctggattgtccattggaggaagatgagtttgaagaagaatatgacgccttgaatgatgaa
acatttggccctgatgcggctattggtgattgggaggaagatcatgagaagcttgccgaa
attacagaatcaaatcgcccacagaatcagaatgcaacaagcaaaaagaatatttctaat
atagatattgaggataacttatcacatttggtattggataaggaagggatagttccacga
cctggtgtatggggcagccctttgaatctatcccctccaaaggctcaaccgcggttatct
ttgccaactttgaaaaatgcctgtactgtggaagagctcgaaagggggcttgttgcaaat
agaccacctccaggtctcagtaaaccacaaacgcaacaacagcagaaaaagtctgaaggt
tcacttctttttgaggccctatctttgaatgagaaatttcaggtcaatggcctacctccg
acacgtttcccaccggggttaggcctacctggggcccatcccatagttttgcccaacata
agagtaccgcatcctcaattgatgcaacctcctagattattaggcttaattaatcaaaca
ggcaatatgttacgatatcctctaccaccgcatttaatgttatcacagccagtaccgagg
caacctcttcatggctcctatagttttcctcaaccaccacatcctaacttaggaggtcca
cagtttctacggccagatcatatgatgtctgcatttcctaataaccaagccaatcatcat
caacaacaccaacatccttatttaggaaatcagagaaaccaaaacagatcttactatcat
aatgatcaacaacccggacatcaaccattttttaagaataatcaatatcctcaacgcagt
catgacagaactaatcagagatattatcatcaacattattctcatggtgttaacggtaat
gcttcaggagagtatgaactctcaggaaaacttgctataaaagctcacgagaaacactgg
ttaatcaatatacaactgttacaacttaatacaattcaaccatatgttgatgatcactat
tatattgtattctgtgataaacggaataagcgacatgcgaatcaagaacagaaagataaa
aaacaccataatactaatggatatcacagagatcatagagattgggaaccaacatcccaa
gctccttcaagatcagcatacacgccagctcagtttgagaattcattaggcaaacttcat
tgcagtagtgttacggcaccgcgcaaacttatcgatatggatgtcgtgtcaaatagcgat
tctcagtctaattctcaatcacaacaaaaggacactaaaaagacacgccaattactcctt
gaaatcgaaaggctatatacactgctattcaaactcgaggatctgagtaatcctcttgct
tcaattccggagccgcaacagcagcaggaaggagaagttgagacaaatacaattaaaacc
aaaccagaattaattagcatgacactgtcatgtttgcaacaattaatacaagatgataaa
ttagctagtatgctaagtattcgaaaaggaaagacattattactgcgttttttacctcat
ctgaatgtgacagaatataataagcagttaaaagaattgtggactgcgatatttaaagga
ttagccgtgataggccgtagagattgtcatttattaacggacttctactctgaattttgg
agatggcttaatactgtgaaagattttgatacagtattgcgattagcaagagcgttatcg
gactcggctacccatcccgtcaaaaacaacagtttaagttttgctcttatgaataagttt
ggtatatctgcaatagcagcaatgctcgagcaagcagaacaattatgcgctacaaacgat
tccttgccttctgaatggtcaactttcatagaaatgatagttgaaataattggtggctcg
tcatcctgcattacaccttgtcaaccgattgctgcaatgacgctcaataaacatctgaat
cggatttccagtttaaaaatagaaaggtatacaacgctagtgcgcttgttgactgatacc
aatcctttacgatag
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