Polyergus mexicanus: 138945039
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Entry
138945039 CDS
T10742
Symbol
Tst
Name
(RefSeq) superkiller complex protein 2 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pmec Polyergus mexicanus
Pathway
pmec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138945039 (Tst)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmec03019
]
138945039 (Tst)
Enzymes [BR:
pmec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138945039 (Tst)
Messenger RNA biogenesis [BR:
pmec03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
138945039 (Tst)
mRNA degradation factors
3'-5' decay
Ski complex
138945039 (Tst)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
Helicase_C
ResIII
DEXQc_Suv3
MTR4_beta-barrel
ATPase_2
nSTAND3
DUF3516
PhoH
Motif
Other DBs
NCBI-GeneID:
138945039
NCBI-ProteinID:
XP_070172311
LinkDB
All DBs
Position
Unknown
AA seq
1209 aa
AA seq
DB search
MKESSELYVDPPPIWPDIKLELRDYIECPERLPIHQLDSAQCYWSRKPNVCSLLEFDLAP
IDTTLKFDRDPITGKIGEMQEIVLQGAGETARNSMSMTRAPGPLTDGVRGNPSNIPFWPG
GFEEPKVPENEFLNDIDFEKNLRTLAKGFSSGIEFKSDNCTPINCTKNETEVEEIKKSKE
LKIDNNINLMAVIHEEGNLLGLWSSTEEPKKENVQISDNNLPFTDISILPEETNIPVLKI
SEKQSEFAKTDWAEQLDVSAPITDFDKRIPDPAIKFEYELDTFQKQAILKLEENSNVFVA
AHTSAGKTTVAEYAIALSQKHMTRVIYTSPIKALSNQKYREFKRKFESVGLLTGDLQINQ
TASCLIMTTEILQSMLYCASDVLRDLEFVIFDEVHYINNEDRGHVWEEIVILLPQTINIV
MLSATVPNPIIFADWVGRIKKRKMYVISTLKRPIPLLHYLYTGTDGKTKDDKFLVVDGNS
QFLLDGWYKATNASDKKKNKNPKNFRRRIQMTPKQEEVLWRAFISHLQKNDMLPVVVFTL
SRKRCDMNAATLRNLDLTTAREKHQVHAFFQSNIKHLKGSDRELPQVLMMQELLEKGVGI
HHSGILPILREIVEMLFQSGVVKLLFATETFAMGVNMPARTVVFDSIRKYDGNNFRILHP
TEYIQMAGRAGRRGHDTTGTVIVMCRYDVPHFNDLKPMMCGEPQTLESKFKVTYSMLLNL
RRVNESVTVEAMMRKSFKESPLASQEATYNSELRKIERELSNLPTFTEMQKKLSTFYHVA
VDYLEDVKFLNPYLFESKKLAKALTEGRILLISYANHYNKLGLLLQVMHYKTFTQYKVLV
LKDADTSNSEAAEFKNSQIYEKWCEIISLTKKKIFVPSTNTSHEIVTLYSWHILKITKCQ
IKVDCSLVLNDWEKRQISRFKNDPPGQTCQTAVQELISLSFNAVANDQVLCPYIELLSKN
DLQLRIQHRDKLKAELNDMRCMEIPNFEEQFRPVFERNQLEDKKRQLQLKLSDEGMALYP
DYMNMVALLKHLRYIDSDERVGLKGRVALQMGSNELLITELILKNVLTVLQPAEIVALLS
ALIFQQRTDSEPTLTPNLANGCKIMSEVHAELERLEQQYQLSTIPSLNFGLVEVVYEWAQ
AKSFAEIMKMTDVQEGIIVRCIQQLGETLRDVKNAAVTIGDPILKEKMEEASTAIKRDIV
FAASLYTQD
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaatcatcagagttatacgtcgatcctccaccaatttggcctgacatcaaatta
gaattacgggattatatcgaatgtcctgagcgattacctatacatcagctggacagtgct
caatgttactggtcgcgtaaaccaaatgtttgttcgttattggagtttgatttggctcca
atcgatactacgctaaaatttgatcgcgatcctataacaggcaagattggcgaaatgcaa
gaaattgttttgcaaggtgcaggagaaacagcaaggaattctatgtctatgactcgtgca
cctggaccgcttacagatggagttcgaggtaatcctagtaatattcctttttggcctggt
ggttttgaagaacctaaagtacctgaaaatgaatttctaaacgatattgattttgaaaag
aatttaaggacgttagccaaaggctttagctcgggtatagaatttaaaagcgacaattgc
acaccgattaattgcacaaagaatgaaacagaagtcgaagagattaaaaaatctaaagaa
ttaaaaattgacaataatatcaatttaatggctgttatacatgaggagggaaatttactt
ggtttatggtcttcaactgaagagccaaagaaagagaatgttcaaatttcggataacaac
cttccatttacagacatttctattttgcctgaagagacgaatatacctgtcttgaaaata
tcagaaaaacaatcagagtttgcaaagacagattgggcagagcagttggatgtgtctgca
ccgataactgattttgacaagagaatacctgatccagcaattaaatttgaatatgaatta
gacacttttcagaagcaagctattcttaagttggaggagaatagcaatgtctttgttgct
gcgcatacgtcagcaggaaagactactgttgctgaatacgccattgcattgagtcaaaag
catatgacgagagtgatttatacatcccctataaaagcgctatcaaatcagaaatatcgc
gagtttaagagaaagtttgaaagcgttggattattaacaggtgatttgcaaataaatcaa
actgcttcatgcctaatcatgacgacagagattctacagtcaatgttgtattgtgcatct
gatgttttacgagatttagaatttgtcatatttgatgaagtgcattatataaataatgaa
gataggggtcacgtatgggaggaaattgtcattcttttaccacagacaatcaatatagta
atgttatctgcgactgtaccaaatccaataatattcgcagattgggtcggtcgtatcaag
aagcgaaagatgtacgtgattagcactttgaaaagaccaatacctcttctacattactta
tacactggcactgatggtaagactaaagatgataagtttttggtcgttgatggcaacagc
caattcttattagatggatggtacaaagcgaccaatgcatcagataagaaaaagaataaa
aacccaaagaattttaggagaagaattcagatgactccaaaacaagaagaagtattatgg
agagcatttataagtcatctccagaaaaatgatatgttacctgttgttgtatttactttg
tcaagaaaacggtgtgatatgaatgctgctacactgagaaatctcgacttaacaaccgcg
agggagaaacatcaagtgcatgcattttttcaatctaatataaaacatctgaaaggtagt
gatagagaattaccacaagtacttatgatgcaagagctcttggagaaaggtgtaggtata
catcatagcgggatactgccaattttgagagaaatcgtagaaatgttattccaaagtgga
gttgtaaagttactattcgcgacagaaacttttgctatgggagttaatatgccagctcgc
acggtggtatttgattccatacgaaagtacgacggaaacaactttcgtatcttacacccg
actgaatatatacaaatggctggtagagccggacggcgaggtcacgacacaacgggaaca
gttatagtgatgtgcaggtacgacgtaccgcactttaacgacttgaaacctatgatgtgc
ggcgagccgcagacattggagtcgaaattcaaagtcacgtattccatgctcttaaatttg
agaagggtgaatgaatccgtcaccgttgaagcgatgatgcgcaagtctttcaaggaatca
ccgctagcatcacaggaagcgacgtataatagcgagttacgaaaaatcgagcgagaatta
tcaaatctgccgactttcactgagatgcagaagaagctctctacgttttatcacgtggcg
gtcgattatctagaggacgttaaatttctaaatccttatttgttcgaatccaaaaagtta
gcgaaagctttaaccgaaggcagaatcttgttaatatcatatgcaaatcattacaacaaa
ttaggtctattactgcaagtcatgcattataaaactttcacccaatacaaagtgttggta
ctcaaggacgcggatacatccaattccgaggctgctgaattcaagaattctcaaatatat
gaaaaatggtgtgaaattattagtttaacgaaaaaaaagatatttgttccaagtactaat
acatcgcacgagatcgtgactttatactcatggcatatattgaagataactaagtgtcag
ataaaagtcgattgctctttagtgctgaatgattgggaaaagaggcaaatttcacgattt
aaaaacgatccaccgggacagacgtgtcagacggcggttcaagaattaatttctctatca
tttaatgctgtcgccaatgatcaagttctatgtccgtatatcgaacttttatcgaaaaat
gatcttcaattaagaatacagcatagagacaaattaaaagctgaactcaacgacatgaga
tgcatggaaataccgaatttcgaagaacagtttagacctgtcttcgaacgaaatcaactc
gaagataaaaaacggcagctccagcttaaacttagcgatgaaggaatggcgctgtatccg
gattatatgaatatggtggctttgctcaaacatttgagatatatagatagcgatgaaaga
gttggtttaaaaggaagagtcgcgctgcaaatgggtagtaacgagttgttgataacagag
ctgattctcaagaatgtgttaaccgttttacaaccagcggaaatagtagcgttgttatca
gcattaatctttcagcaacgtacagattcggaacctacactcacaccgaatctcgctaat
ggttgcaagataatgagcgaggtgcatgcggaattggaacgtttagagcagcaatatcaa
ttgtcgacgataccttctttgaatttcggtttggtggaagttgtctacgaatgggcgcaa
gctaaatcgttcgcagagatcatgaaaatgacggacgtccaagaaggaattatagttcga
tgcatacaacaactcggcgaaactttgcgagatgttaaaaatgcggccgtgactataggt
gatccgattttgaaagaaaagatggaagaagcttcgaccgcaatcaaacgtgacatagtt
ttcgccgcatctttgtatactcaagattag
DBGET
integrated database retrieval system
