Polyergus mexicanus: 138945065
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Entry
138945065 CDS
T10742
Symbol
L(3)72ab
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pmec Polyergus mexicanus
Pathway
pmec03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmec00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138945065 (L(3)72ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmec03041
]
138945065 (L(3)72ab)
Enzymes [BR:
pmec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138945065 (L(3)72ab)
Spliceosome [BR:
pmec03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
138945065 (L(3)72ab)
Complex C
U5 SnRNP specific factors
138945065 (L(3)72ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_30
AAA_22
AAA_16
DEXQc_Suv3
HTH_61
nSTAND3
PhoH
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
138945065
NCBI-ProteinID:
XP_070172358
LinkDB
All DBs
Position
Unknown
AA seq
2133 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVMSLVGKLDGTRMGDRAQRTK
PGKAEERKVKRQKRDEAQYDFARMKGATLLSEGVDKMVGIVYRPKTQETRQTYEVLLSFI
QEALGDQPRDILCGAADEVLAVLKNDRLKEKEKKKETELLLGSLAEERFALLVNLGKKIT
DFGSDEKSTTNDENIDETYGINVQFEESSEEDDEDVYGEVRENDDEGDEGEEANDDRAIH
AENLGGTEEMKKEKPLHPLDIDAYWLQRRLSRIYDDAMVSQARAAEVLAVLKDAADDREC
ENQLVLLLGYDCFDFIKQLKKYRHTVAYCTMLASSQSESERQKIRNKMNDDPVLAKILRQ
LDTGKGEDDADETMEARSQRKRREENEDTGGPGGQVQGTRNLIDLEDLIFAQGSHFMANK
RCQLPDGSFRKQRKGYEEVHVPALKPKPFAENERLHPIEQLPKYVQPAFEGFNTLNRIQS
RLYQTALESDENLLLCAPTGAGKTNVALLCMMREIGKHINADGTINADEFKVIYVAPMRS
LVQEMVGNFRKRLSTYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGEKTFT
SLVRLIIIDEIHLLHDERGPVLEALVARTIRNIETTQEDVRLVGLSATLPNYQDVAAFLR
IKPESGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLIFVH
SRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAEQVKNQELKDLLPYGFAIHH
AGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELGA
LDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQLISKMSDMLNAEVV
LGTIQNIRDAVTWLGYTYLYIRMLRCPNLYGISNDKLNQDTLLELHRADLIHSAAVGLDR
SGLIKYDRKSGNFQATELGRIASHYYCTHETMSTYNQLLKRTLSEIELFRVFSLSGEFKN
INVREEEKLELQKLMERVPIPVKESIEEPSAKVNVLLQAYISQLKLEGFALMSDMVFVTQ
SASRLMRAIFEIVLFRGWAQLADKCLSLCKMIDRRMWQSMSPLRQFRKMPEEIVKKIEKK
NFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLGLSTHIQPITRSTLRVVLTITP
DFQWDEKIHGMSEAFWILVEDVDSEVILHHEYFLLKAKYAADEHIIKFFVPVFEPLPPQY
FLRMVSDRWIGAETQLPVSFRHLILPEKNLPPTELLDLQALPITALRNTKFENIYSEFPQ
FNPIQTQVFNAVYNSDDNVFVGAPTGSGKTTIAEFAVLRLLTQNPEGRCVYMVSKEALAE
LVYDDWAKKFGQQLGRKVVLLTGETGTDLKLLAKGQIIITTADKWDVLSRRWKQRKNVQN
IQLFIVDELQLIGGEEGPVLEVACSRARYISSQLDKPTRIIALSASLGDAKDAAQWLGAP
AAATFNFHPSVRPVPLELHVQGINVTHNASRLAAMAKPVYNAILRHAAHKPVIIFVPTRR
QARLTAIDLLTFTAAEGQPSKFFHAEEADIIPFLDRMVDKTLKETLSQGVAYLHEGLSAD
DRRLVERLFDSGAVQVAVATRDLCWGLSINSHLVVVMDTQCYNGKTHAYEDYPITDVLQM
VARANRPLEDEDAKCVLLCQSSKKDFFKKFLNEPLPVESHLDRRLHDHFNAEIVTKTIEN
KQDGVDYLTWTFLYRRLTQNPNYYGLQGVTHRHLSDHLSELVESTLTDLEQAKCVAVEEE
MDTLPLNLGMIAAYYYINYATIELFSLSLNNKTKIRGLLEIISAAAEYESVPVRQREENL
LRSLAARLPHAPQATRMADPHVKAQLLLQAHLSRIQLGPELQKDTELVLGKAVRLIQACV
DVLSSSGWLAPAVAAMELAQMVTQAMWSKDSYLKQLPHFTAETIKRCTDKGVETVFDVME
LEDDDRNRLLQLTDAQMADVAKFCNRYPNIEMSYEVQDKDKLRSGGTVNVIVQLEREDEV
TGPVVAPFFPQKREEGWWVVIGDPKSNSLLSIKRLTLQQKAKIKLDFVAPAPGQHSYTLY
FMSDAYLGCDQEYKFTINIGEYESDASSGSDSD
NT seq
6402 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgctgctgctcgtcaattacaatacgagtataaagcgaactctaatctcgtt
ttacaagctgacgtccggttaatagagagacgtagtcgagatgaagctactggtgaagtt
atgtcccttgtgggaaaattggatggtacacgcatgggcgatagagcccagcgtaccaaa
ccagggaaagcagaggagagaaaagtcaaacgtcaaaaacgcgatgaagcacagtacgac
tttgcacgtatgaaaggagcaacattattgtccgaaggtgtggataaaatggttggcatc
gtatatcgtccaaaaacacaagagacacgtcaaacttatgaggtattgctcagttttata
caagaagctttaggtgatcaaccacgcgatattctttgcggtgcagctgatgaagtactg
gctgtgttaaagaatgatcggcttaaagagaaagagaagaagaaagaaacagaactttta
cttggttcattagcggaagaaagatttgccctgcttgtcaaccttggaaaaaagatcaca
gactttggcagtgatgaaaaaagcacaacaaacgatgaaaatattgatgaaacatatgga
attaatgtacagtttgaagagagtagcgaagaggacgatgaagatgtgtacggagaagtc
agggaaaatgacgatgaaggcgatgaaggtgaagaagctaatgacgacagagctattcat
gcagaaaatttgggtggtacagaagaaatgaagaaagaaaaaccattacatccattagac
atagatgcatattggttgcaaagaaggttaagtagaatatatgacgacgctatggtttcg
caagcgagagctgccgaggtgttagccgttttaaaggatgccgcagatgatcgcgaatgc
gagaatcagcttgtgctgctgttgggctatgattgcttcgactttattaaacagcttaaa
aagtatagacatacagttgcatattgtacaatgttggcctcatcgcagtctgaatcagaa
agacaaaagattcgtaataagatgaacgatgacccagtattggcgaaaattttacggcaa
ttggacacgggtaagggtgaagatgacgccgacgaaacaatggaagcaagatcgcaacgc
aagagacgggaagaaaacgaagacacgggagggcctgggggacaggttcaaggtacaaga
aatttgatagatttggaggatttgatattcgctcagggaagtcactttatggcgaataaa
cgttgccaactgcctgatggcagttttcggaagcagcgaaaaggatacgaagaagttcac
gttcctgccttgaagccgaaaccatttgcagaaaacgagaggttacacccgatcgaacaa
ttgcctaagtacgtgcaacccgcttttgaaggcttcaacacattgaatcgcatacaaagc
cgtttatatcaaacggcattggaaagcgacgagaatctgctgttgtgcgctccaacagga
gcgggtaaaactaacgtagctctattatgcatgatgcgggagatcggaaagcatataaac
gccgatggtacgattaacgcggatgagttcaaagtgatttacgtcgctccaatgcgttcg
ttggtgcaggaaatggtcggtaattttcgtaagcgattgtcaacgtacaatctgaccgtc
tctgagttgacaggtgatcatcaattaacgcgagagcaaattgctgctactcaagtaata
gtatgtaccccggagaagtgggacatcataacgaggaagggtggagagaaaacttttaca
tcattagtacgattgattattatcgacgagattcacttgttgcatgacgagaggggtcct
gttctagaagctttagttgcgagaacaatacggaatattgagactactcaagaggatgtg
cgacttgttggtctgtcggccacgttacccaattatcaagacgtcgcagcattcttgcgt
attaaaccggaatcaggactattctatttcgacaatagtttccgacctgtagctctagaa
cagcaatatatcggcgtcaccgagaagaaagcgctaaaacgtttccaggtgatgaacgag
atcgtctatgagaagacaatggaacacgccggtagaaatcaggttttgatattcgtgcac
tcgcgcaaggaaactggaaaaacggcacgcgctattagagatatgtgcttggagaaagac
actctgggtcaattccttagagagggttccgcgtcgatggaagttttgagaacggaagcg
gagcaagtgaagaatcaagaactcaaggatctgttgccatatggattcgcgattcatcac
gctggtatgacccgagtggatcgcacattagtggaagatctcttcgccgacagacatata
caggttctcgtatctactgcgactttagcctggggtgtcaatttgccagctcatacagtc
atcattaaaggaactcaggtctataatccggagaaaggcagatgggtagaactgggcgct
ctcgatgtgctgcaaatgttaggaagagctggtcgacctcaatacgataccaagggcgag
ggtattcttatcacaaatcacagcgaattacagtattatctatcgcttctaaatcaacaa
ttacccatcgaatcccaattaatcagcaagatgtccgacatgttgaatgcggaggtagtg
ttaggtacaatccagaatattagagacgcagtcacgtggctcggctatacttatctttat
atcagaatgcttcgttgccctaatttatatgggataagtaacgataaattaaaccaagat
actttattagaattgcatagagccgatctgattcattcagccgcagtcggattagatcgc
agcggtttaatcaagtatgatcgcaagtccggcaattttcaggcaaccgaattgggcaga
atagcgtctcactattattgcactcacgagacgatgtctacatacaatcagctgctgaaa
cgcacattgagcgagatagaattgttccgcgtattctcgctctcgggcgaattcaagaat
ataaatgttagagaagaagaaaagctagagctacagaagctaatggaaagagtaccaatt
cccgtgaaagagagcatcgaagaaccgagcgcgaaagtaaatgtgcttttacaggcgtac
atctcgcaattaaaactcgagggattcgctcttatgtccgacatggtgtttgtgacgcaa
tctgcctcgcgtctcatgcgagccatttttgaaatagtcctgtttcgcggctgggcgcaa
ttggcggataaatgtctctccttatgcaagatgatcgaccgcaggatgtggcaatctatg
tcgccgctcagacaattccgcaagatgccggaagaaatcgtaaagaagatagagaagaag
aatttcccgtgggagagactgtacgatttaggtcctaatgagattggagaattgatccgt
gtaccgaaattgggcaagaccattcacaaatacgttcaccaatttccgaagctcggtcta
tcgacgcatattcagcccatcacacgttccaccctgcgagttgtgctaactattacgcca
gatttccaatgggatgagaaaattcacggtatgtcggaagcgttttggatcctggtcgaa
gatgtagattcagaggtgatattgcatcatgaatattttttattaaaggccaaatacgct
gctgacgaacatataatcaagttttttgtaccggttttcgagcctttaccgccgcaatat
tttttgcgtatggtatccgaccgatggatcggggcggagacgcaattgcccgtaagtttt
cgacatctgatattacccgagaagaatctaccacccacggaactgttggatttgcaagca
ctaccaatcacagcgttgcgaaacacaaaattcgaaaacatctattccgaatttccgcag
tttaatcctattcaaacgcaggtgttcaacgcggtttataattccgatgataacgtgttt
gtcggagcgcctacaggctctggcaaaacgaccatcgcggaattcgcggtattgagattg
ctgacgcaaaatccggaaggtcgatgcgtatacatggtgagcaaggaagcattggccgaa
ttagtctacgacgattgggcgaagaaattcggccaacaattaggtagaaaagtcgttctt
ctgacgggcgaaacgggaacggatctgaaactattggccaagggacagatcattatcact
acggcggacaaatgggacgtgttatcgcgcagatggaaacaacggaaaaacgtgcaaaac
attcaattatttatcgtggacgagctgcagttgattggtggagaggaaggccccgtactg
gaagtcgcgtgttcgcgagcacgttacatttcctcacagcttgacaagcccaccagaata
atagcattgtcggcctcgttgggtgatgccaaagacgccgcgcagtggctaggtgcacca
gcagcggctactttcaatttccatccctccgtacgaccggtgccgttggagctgcacgtc
caaggtataaacgtcactcataatgcatcgagattggccgctatggcgaaaccggtatat
aacgcaatccttcggcatgctgcgcataaaccggtaatcatatttgtgcctacacgtcga
caagcgagattaacggctatcgacttgctaacattcacggcagctgagggtcaaccgtca
aagttcttccatgcagaagaagccgacattattccgttcctcgatcggatggtcgataaa
acgttaaaggagactctatcacaaggtgtggcttatcttcacgaaggtttatcggccgac
gaccgtcgtttggtcgaacgattgttcgacagcggcgctgtacaagtggcagtcgctacg
agggacctctgctggggtttatccatcaattcccacttggttgtggtcatggatacacag
tgctacaacggtaaaacacacgcctatgaagattatccgatcacggacgttttgcagatg
gtggcgcgagctaatcgtccactggaggatgaagatgccaagtgtgtgctcctgtgtcaa
agctcaaagaaagatttcttcaaaaagtttctgaacgaaccattaccggtagagagccat
ctggaccgccggctacacgatcacttcaacgcagaaatcgtgacaaagacaatcgagaac
aaacaggatggagtcgattacctcacgtggaccttcctgtatcgacgacttacccagaat
cccaattactatggtttgcagggtgtcacgcaccggcatctctcggatcatctgtctgag
ctagttgaaagtacattaaccgatcttgaacaagccaagtgtgtcgccgtggaggaggag
atggacaccttaccgctcaatctaggaatgatcgccgcctattactatatcaattacgcc
accatcgaattgttcagtttgtctctcaacaacaagacgaagattagaggcttactagag
attatttcggcagccgccgagtacgagagcgttccggtgcgacagagggaagaaaattta
ttgagaagtctagccgcacgtctacctcatgcaccacaagccaccagaatggccgatcct
catgtaaaggcacaattattgttgcaggctcatttgtcgaggatacagttgggtccagaa
ttgcaaaaggataccgaattggtgctgggcaaggccgtaaggctgatacaagcttgcgtc
gacgtgctgagctcctccggatggttagcgcccgccgtcgccgctatggaattggcacag
atggtgacgcaggcaatgtggtccaaagattcttatttaaaacagttgccacatttcaca
gctgagaccataaagcgctgcaccgacaagggcgtggaaaccgtgttcgacgtgatggag
ctcgaggatgacgatcggaatcgactgttgcaactaacggacgcgcaaatggcggatgtc
gccaagttctgtaatcgttatcccaacattgagatgtcgtatgaggtgcaagataaagat
aaattacgtagcggtggtacggtaaatgtgatcgtgcaattggaacgggaggacgaggtc
accggcccggtggtcgcgccattctttccgcagaaacgcgaggaaggctggtgggtagtg
atcggtgatccgaagagcaactcattactatctatcaagcggctaacgttgcagcaaaag
gcaaaaatcaagctggactttgttgccccggcgcccggtcagcattcctacactctgtat
tttatgagcgacgcttatcttggctgcgatcaggaatacaagtttaccatcaacatcggg
gaatacgaatcggatgccagttccggttccgattccgattga
DBGET
integrated database retrieval system
