Pseudomonas mediterranea: E3Z27_03385
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Entry
E3Z27_03385 CDS
T08284
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pmed
Pseudomonas mediterranea
Pathway
pmed03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
E3Z27_03385 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmed03400
]
E3Z27_03385 (recC)
Enzymes [BR:
pmed01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
E3Z27_03385 (recC)
DNA repair and recombination proteins [BR:
pmed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
E3Z27_03385 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
QHA80782
LinkDB
All DBs
Position
787460..790912
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AA seq
1150 aa
AA seq
DB search
MPDATSLSPAFMVIHGNRLDELRSLVISLMRRYPLGPLENEIALVQSNGIAQWLKLALAE
DPEDDDTGGCGIAAAIDVQLPGSFMWQLYRSVLGRDEIPAKSLLDKAPLTWRLMRLLPQL
IEQPHFEPLRRFLTHDTDLRKRYQLSERLADLFDQYQVYRADWLEDWAEGRHQTRNVRGE
IKALAPANCWQAELWRALLMDVGEEGMAQSRAGVHQRYIERINSLEAAPKGLPARVIVFG
ISSLPAQALEALAGLSRFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQARKAGMPAIL
DPQSLHQHAHPLLAAWGKQGRDYINLLDSYDDPNRYRSVFRDGRIDLFSDGNPTTLLSQL
QDDILELRPLAETRERWPAVDTARDGSIRFHVAHSAQREVEILHDQLLAHFSADPTLRPR
DIIVMVPDIDSYAPHIRAVFGQLDRTDPRFIPFTLTDQGQRGRDPLLIAVEHLLKLPDSR
FPVSEILDLLDVPALRKRFGINEADLPTLHRWIEGAGIRWGMNAEHRAGLGLPAELEQNS
WRFGLRRMLLGYAVGSSDAYEGIEPYDEIGGLEAALIGPLAALLDALEVAHQSLTEPASP
QVWGSRLRDLMQLFFQADSEHDDYLLAQLEDLRETWLETCESVGLQDELPLTVVREAWLA
GLDQGRLSQRFLAGAVNFCTLMPMRAIPFNLVCLLGMNDGDYPRAQPPLDFDLMGSDYRP
GDRSRREDDRYLLLEALLSAREKLYISWVGRSIRDNSERPASVLIGQLRDHLASGWRLTD
DSKDLVEALTQEHPLQPFSARYFLQGSELFSYASEWRMLHDNLAPAGNAQVLEPYVQEEP
LSLGQLQDFLRNPVRHFFSQRLKVFFEAIEAPLADDEPFVLDALQRYSLSDSLLEAALVR
LDQPDLALEAHARRLQNSGLLPMAGFGEYMQRELIEPLPDLLQRYQQLLALWPTPLTSAV
PVNLQLHDVSVEGWLSGLHQRSDGAVLAITTIPNSIGSVRTRKWHRLIRPWVNHLVACAS
GLSMTTALVASDDSLLLAPFEEPVARRLLSDLLQAWQSGMRQPLPIAVKTAFAWLGQTDP
DKAEAAARRAYEGDGLTSEGERRESPALARQFVDFDALVADETFPDWCDALYRPLFDAPW
LSAIGEEAQS
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgccggacgcaacgtccctcagcccagccttcatggtgattcatggcaatcgccttgat
gaactgcgcagcctggtcatcagcttgatgcgacgttatccgctgggcccgcttgagaat
gaaatcgcactggtacagagcaacggtattgcccaatggctcaagctggcactggcagag
gatccggaagacgacgataccggcggctgcggcattgcggcagccattgatgtacagctg
cccggcagtttcatgtggcaactctatcgatcggtcctggggcgcgatgagattccggcc
aagtccctactggataaagcccccctcacctggcgactgatgcgcctcttgccgcagttg
atcgagcagcctcatttcgagcccttgcggcggttcctcacccacgacactgacctacgc
aagcgctatcagttgtccgaacgccttgccgatttgttcgaccagtatcaggtgtaccgg
gctgattggctcgaagactgggcagagggccggcaccagacgagaaatgttcgcggcgaa
atcaaggcgcttgcgcctgctaattgctggcaagccgagctgtggcgagccttgttgatg
gatgtgggagaagaaggcatggctcaaagccgtgcgggcgtccatcaacggtacatcgag
cgtatcaatagcctggaagccgctccgaaaggacttcctgcacgggtgatcgtgtttggt
atttcctcgctgccggcgcaggccctcgaggcgctggccggtctttcgcggttcagccag
gtcctgctgtgtgtccataacccttgtcgtcatcattgggcggacatcgtggccgacaag
gacctgcttcgccaccagtacaagcgtcaggcacgcaaggctggcatgcccgcaatcctc
gatccacaatccttgcatcaacatgctcatccgttactcgcggcatggggcaagcagggc
cgtgactatatcaacctgctcgacagctacgatgatcccaatcgctatcgctcggtgttt
cgcgatggccggatcgacctgttcagtgatggcaaccccacgaccttgctcagccagttg
caggatgacattcttgagctgcgtcccctggctgaaacccgggagcgttggcctgccgtg
gatacggcgcgagacggatcgatccgtttccatgtcgcccacagcgcccaacgcgaagtc
gaaatcctgcatgaccagttattggcccatttcagcgcggacccgacgctgcgtcctcgg
gacatcatcgtcatggtcccggacatcgacagttatgctccgcatatccgtgccgtgttc
ggtcagctcgacaggacggatccgcgcttcattcccttcaccctgaccgaccaggggcag
cgtggacgtgatccactgctgattgccgtcgagcatttgctgaagctgcccgatagccgc
ttccccgtcagcgaaatcctcgacttgttggatgtcccggccctgcgcaagcggttcggc
attaatgaggccgacttgccgacactgcaccgttggatcgagggtgcgggtattcgttgg
ggcatgaacgccgaacaccgcgccgggctcggtctgcccgccgagcttgagcagaacagc
tggcggtttggtctgcgacgcatgctgttggggtatgcggtcggcagttcggacgcctat
gaaggcattgaaccctatgacgaaatcggtggccttgaggcggcattgatcgggcccctg
gccgcattactggacgcgctggaggtcgcccaccagtcgctcaccgagcccgcatctcca
caggtgtggggctcccgtttgcgtgacttgatgcagttgtttttccaggcggacagtgag
catgacgactatctgctggcccagctcgaggacctgcgcgaaacgtggttggaaacctgc
gagtcggttgggctgcaggatgaattgccgttgacggtggtacgcgaggcttggctggca
gggctggatcaaggtcggctgtcccagcgctttctcgccggagcggtcaacttctgcacg
ctgatgccgatgcgggcaattcccttcaatctggtgtgcctgctggggatgaacgacggt
gattatccgagagcccagccaccattggatttcgatctcatggggagcgactatcgtccc
ggcgatcgctcccggcgtgaggacgatcgttacctcctattggaggcgctgctgtcggcc
cgggaaaaactctatatcagttgggttgggcgtagtatccgcgataacagcgaacgcccc
gcatcggtattgatcggccagttgcgggatcacctggccagtggctggagactgacggac
gacagcaaggaccttgtcgaggcgctgacccaggagcatcccctgcaaccgttcagtgcc
cgttacttcctccagggcagtgaattgttcagctatgccagcgagtggcggatgctccac
gacaacctggcccctgcgggcaatgcccaggtgctggaaccctatgtccaggaagagccc
ttgagcctcggacaattgcaggacttcctgcgcaatcccgtccgccactttttcagccag
cgactcaaggtgttcttcgaggccatcgaagccccgttggccgatgacgaacccttcgtg
ctcgatgccctccaacgctacagcctgagcgacagcttgctcgaagccgccctggtgcgc
ctggaccagccggatctggccctggaggcccatgccaggcgcctgcagaatagcggcctg
ttacccatggcgggtttcggggagtacatgcaacgcgaactgatcgagcctctaccggat
ctgctccagcgatatcagcagcttctggcgttatggcccacgccgttgaccagcgcggtg
cctgtcaatctccaattgcatgatgtcagtgtcgaaggatggctcagtggcctgcaccag
cgttccgacggcgcggtccttgcgatcaccaccatacccaacagcatcggctccgtcagg
acccgcaagtggcatcgcctgatacgtccctgggtcaatcatctcgtggcgtgcgccagc
gggctgtcgatgaccaccgcattggtggccagtgatgacagtttgctgctggcacctttt
gaagaaccggtggcgagaagactgctcagcgacctgttgcaggcctggcagtcgggcatg
cgccagccactgccgatcgcggtgaaaacagccttcgcctggcttggccagacggacccg
gataaagccgaggcggcggcccgaagagcctacgaaggcgatgggctgacctctgaaggc
gagcgacgggagagtccggccctggcgcggcagtttgtcgatttcgatgccctcgtggcg
gacgagacatttcctgactggtgcgatgcgctttatcggccgttgttcgacgcgccgtgg
ctttccgcgatcggcgaggaggctcaatcatga
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