Pseudomonas mediterranea: E3Z27_04225
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Entry
E3Z27_04225 CDS
T08284
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pmed
Pseudomonas mediterranea
Pathway
pmed02020
Two-component system
pmed02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pmed00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
E3Z27_04225
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
E3Z27_04225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmed03021
]
E3Z27_04225
Transcription machinery [BR:
pmed03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
E3Z27_04225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
DUF4741
RRP4_S1
HTH_21
TrmO_C
Motif
Other DBs
NCBI-ProteinID:
QHA80937
UniProt:
A0A6I6QCG5
LinkDB
All DBs
Position
complement(1014316..1015812)
Genome browser
AA seq
498 aa
AA seq
DB search
MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNTD
PLADNVEQKPNTEIQETSYQEEAAPTVDNLEEGEWNERIPNDLPVDTAWEDVYQTSASSL
PSSDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLEE
ILEAFDPELDIELDEIEAVLHRIQQFEPAGIGARNLGECLLLQLRQLPAKTPWLAEAKRL
VTDYIDLLGGRDYSQLMRRMKLKEDELRQVIELVQSLNPRPGSQIEATEPEYVVPDVIVR
KHNDRWLVELNQESVPKLRVNAQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNET
LMKVATQIVEHQRGFLDYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYEL
KYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVA
KYRESLGIAPSSERKRLM
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctagtcttgagaatgggccagcagctgacgatgacaccgcagctgcaa
caggccatccgcctgctccaattgtcgaccctggacctgcaacaggaaatccaggaggcc
ctggaatccaatccgatgctcgaacgccaggaagaaggcgacgacttcgacaacaccgat
ccgctggctgacaacgtcgagcagaaacccaataccgagattcaggaaacctcctaccag
gaagaagccgccccgacggtggataacctcgaggaaggcgaatggaacgaacggatcccc
aacgacctgcccgtggacacggcctgggaagacgtctaccagaccagtgccagcagcctg
ccgagcagcgacgatgacgagtgggacttcaccacccgcacctccgccggtgaaagcctg
caaagccacctcctgtggcaactgaacctggcaccgatgtccgacaccgatcgcctgatc
gccgtgaccctcatcgactgcatcaacaaccagggctacctggacgaaaccctcgaagaa
atcctcgaagccttcgatccggagctggacatcgagctggacgagatcgaagccgtcctg
caccgtatccaacagttcgagccggccggcatcggcgcccgcaacctgggtgagtgcctg
ctgctgcaactgcgccagctgccagccaagacgccgtggctggccgaagccaagcgactg
gtcaccgactatatcgatctgctgggcggccgcgactacagccagctgatgcgccgcatg
aagctcaaggaagatgagctgcgccaggtgatcgaactggtccagagcctcaacccacgc
ccgggctcacagatcgaggccaccgaacccgagtatgtggttccggacgtgatcgtgcgc
aagcacaacgatcgctggttggtggaactgaaccaggaatcggtacccaagctccgggtc
aacgcccaatacgcgggttttgtaagacgcgccgacaccagcgccgacaacaccttcatg
cgcaaccagttgcaggaagcgcgctggttcatcaagagcctgcagagtcgcaacgaaacc
ctgatgaaggtcgccacccagatcgtcgaacatcaacggggcttcctggattatggcgac
gaagcgatgaaaccgttggtcctgcatgacattgccgaggccgtgggcatgcacgaatcg
acaatctcccgggtgaccacgcagaaattcatgcataccccgcggggtatctacgagttg
aaatattttttctccagccacgtgagcacctccgaaggcggcgaatgctcttccacggcc
atccgcgcgatcatcaagaaactggtggccgcggaaaatcagaaaaagccgttgagtgac
agcaagatcgctggtttactggaggcacaaggcattcaggtggcccgccgtaccgtcgcc
aagtatcgtgaatccctcgggatcgcgccttcgagcgaacgcaagcggctgatgtag
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