Pseudomonas mediterranea: E3Z27_05025
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Entry
E3Z27_05025 CDS
T08284
Name
(GenBank) exodeoxyribonuclease VII large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
pmed
Pseudomonas mediterranea
Pathway
pmed03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
E3Z27_05025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmed03400
]
E3Z27_05025
Enzymes [BR:
pmed01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
E3Z27_05025
DNA repair and recombination proteins [BR:
pmed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
E3Z27_05025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
DUF4807
Motif
Other DBs
NCBI-ProteinID:
QHA85332
LinkDB
All DBs
Position
complement(1174780..1176159)
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AA seq
459 aa
AA seq
DB search
MIKDPFARLGLDREVLTVSQLNGRARVLLEDVFSNIWVEGEISNLARPASGHVYFTLKDS
GAQVRCALFRQNAARVRQALKDGLAVKVRGKVSLFEGRGDYQLILDTVEPAGDGALRLAF
DALKEKLSAEGLFSAERKVPLPAHPQRIGIISSPTGAVIRDIISVFRRRAPQIALTLIPT
AVQGREATAQIVRALKLADARGFDALILARGGGSLEDLWCFNEEAVARAVDACVTPIVSA
VGHETDVSISDFVADVRAPTPSAAAELLAPDAGDLVRRVESLHRRLVMRMRDRLMRDQLR
LEGLTRRLRHPGERLRQQAQRLDDLDMRLRRAFERSLNTRRERLIRLETRLAGQHPGRHL
ALLRQRLDSLAERLPRAMREGLKARRVQLHNQMQTLHIVSPLATLGRGYSILLDERGHAI
RSAGQTQTGQRLTARLGEGELLVRVEDNHLTPVTLSLLD
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgattaaagatccctttgcccgactgggcctggaccgtgaggtcctgactgtcagccaa
ctcaatggccgtgcgcgggtgttgctcgaagacgtattcagcaacatctgggtcgagggc
gaaatctccaacctcgcccgccctgcctccggccatgtgtatttcaccctcaaggacagc
ggtgcccaggtacgctgcgcgctgttccggcagaacgccgcgcgggtgcgccaggccttg
aaggacgggttggcggtcaaggtacgcggcaaggtctcgctgttcgagggccgtggcgac
taccagttgattctcgacaccgtagagccggccggcgacggtgccctgcgcctggccttc
gatgccttgaaggaaaagctcagtgccgaaggtctgttcagcgccgagcgcaaggtgccc
ctgcccgctcatccgcaacgcatcggcatcatcagttcgcccaccggcgcggtgatccgc
gacatcatcagcgtgttccgtcgccgtgcgccgcagattgccctgacgctgatccccacc
gccgtgcagggccgcgaagccaccgcacagatcgtccgcgccttgaagctggcggacgcc
cggggtttcgacgcgctgatcctcgcccgtggcggcggttcgctggaagacttgtggtgc
ttcaacgaagaagccgtggcccgggccgtggacgcctgcgtgacaccgatcgtcagcgcc
gttggccatgaaaccgacgtgtccatcagcgatttcgtcgccgacgtacgcgctccaacg
ccgtccgccgccgccgaactgctggcgccggacgctggcgatctggtgcgccgggtcgaa
agcctgcatcggcggctggtgatgcgcatgcgcgaccgcttgatgcgcgatcaactgcgc
ctcgaaggcctgacccgacgcctgcgccaccccggtgaacgcctgcgccaacaagcccaa
cgcctcgacgacctggacatgcgcctgcgccgggccttcgaacgcagcctcaatacccgc
cgcgaacgcctgatccgcctggaaacccgcctggccggacagcatccgggccggcacctg
gcgctgctgcgccagcgcctggacagcctggccgaacgcctgccccgggccatgcgcgaa
ggcttgaaggcgcgacgcgtgcaattgcacaaccagatgcagacgctgcacatcgtcagc
cccctggcgaccctcggccggggctacagcattttgttggacgaacgcggccatgcgatc
cgcagtgccggacagacccagaccggccagcgcctgacggcccggctcggcgaaggcgaa
ttgctggtacgggtcgaagacaatcacctgacgccggtcaccctttctctactggattga
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