Pseudomonas mediterranea: E3Z27_07375
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Entry
E3Z27_07375 CDS
T08284
Name
(GenBank) AAA family ATPase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pmed
Pseudomonas mediterranea
Pathway
pmed03420
Nucleotide excision repair
pmed03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E3Z27_07375
03430 Mismatch repair
E3Z27_07375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmed03400
]
E3Z27_07375
Enzymes [BR:
pmed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E3Z27_07375
DNA repair and recombination proteins [BR:
pmed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E3Z27_07375
MMR (mismatch excision repair)
Other MMR factors
E3Z27_07375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
AAA_30
Flavi_DEAD
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QHA81519
LinkDB
All DBs
Position
complement(1659195..1661195)
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AA seq
666 aa
AA seq
DB search
MTAFRDLVPEITDEDIEWVSGLMKLEGLDEQRLAFLRSRETLDVSACPGSGKTTLVVAKL
AMLARKWKSRTRGICVLSHTNVARHEIEQRLGNTDVGRRLLSYPHYIDTIHGFVRRFLAT
PWLLSAQYRFTAIDDELTHRMRYRALSEEDKRFLRNFLAHRTFDTSLLRLATADFADPRI
KVAKGKLPSGPDTQSYQIMARAVVDTAKRGYFCYDEIFVLGSAQLAARPNVAEGLRHRFP
CVFIDEMQDTSAMQNEYLGAIFSRDNAGICVTRVGDSNQAIFESDARTNGSDFPDRSRGV
DISTSFRFDESIARLANPFAFHAVAGRLSGRRNVGVEGPLRHTVFVFPDGDCSGVLDAYA
RLAFQEIPVSLHDKAIVTALGYTHKDIDPADTDQMHYPKTVGHYWEGYDRSAGLVAYRPS
TLIERVRHAKRNLAKSETAHHSVEEIAKGLLHLVNLSNLTTKIKVGSRQHVQVQQLLVDL
SDLASYQQLAVDLLFAPNTISAESWASFAQRFWALASVLAGEDEQPEAAQDYLAWVPENA
EALQEGAVQLAANIFRSIQDQGVLDIKLGSIHSSKGQTHTATLVLETYSHEHFIDSLLPW
LAGQKSHGGVRPRKRIVQRLLAMYVAMTRPTHLLCLAISRRTLGEGEEFETNCVQLRGQG
WDIQHL
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgttccgcgacctcgtgcccgagatcaccgacgaggacatcgaatgggtctcg
ggccttatgaagctggaggggctggacgaacagcgcctggcatttcttcggtcgcgggaa
acactcgacgtgtcggcatgcccgggaagcggtaaaactactctggtagtcgccaagctt
gcgatgctcgcccgcaaatggaaaagccgcacacgtgggatctgcgtgctgtcccacacc
aacgtcgctcgccatgaaatcgagcagcgcctcgggaacaccgacgttggccgaaggctg
ctcagttaccctcactacatcgacacgattcatggcttcgtcagacgcttcctcgctacc
ccctggctgctctccgctcaataccgcttcaccgcgatcgacgatgagcttacccaccgg
atgcgttacagggctttgtctgaggaggacaaaaggtttctacgcaatttcctggcccat
agaacgttcgacacctcactcctgcgactagccactgccgactttgctgaccctcgcatc
aaggtcgccaaaggtaagcttccgagcgggccagatactcagagctaccaaatcatggcc
agggcagtcgttgatacggccaaacgcggttacttttgttacgacgaaatcttcgtgctg
ggcagtgctcagcttgccgcgcggccaaacgtggccgaggggctgaggcaccgttttcca
tgcgtattcatcgacgagatgcaggatacctcggcgatgcagaacgagtatctcggcgcc
attttttcccgagacaacgcagggatttgtgtcacgcgtgttggcgactccaatcaggca
atctttgagtcggacgcccgaaccaatggcagtgactttccagatcgaagtcgtggcgtc
gacatatccaccagctttcgcttcgatgagtcgattgccaggttggccaacccctttgcg
ttccatgccgtcgcaggcaggctttcagggcgtcgcaacgtcggggtggaagggccgctt
cgccacaccgtttttgtatttcctgatggtgactgtagtggcgtgctggatgcctacgct
cgtctggctttccaggaaatccccgtttcgctgcatgacaaggccatagtcacggcgctt
ggttatacccacaaagatatcgatcccgccgacactgaccagatgcattacccaaagacg
gtcgggcattactgggagggttatgatcgcagcgcaggtctagtagcgtaccggccatca
acgttgattgagcgcgttcgccacgccaagcgtaatctcgccaaaagcgagactgctcac
cacagcgtcgaagagatcgccaagggcctcctccacctggtgaacctctccaatctcacc
accaaaatcaaagtgggaagtcgacaacatgttcaggttcaacagttgcttgtcgacctg
agcgacttggctagctatcaacagctagcggtcgacctgctgttcgcacctaataccatc
agcgccgagagctgggcatccttcgctcagcgcttctgggcattggcatcagtccttgct
ggagaggatgaacagcccgaggcagctcaggactacctcgcttgggtgccggagaacgca
gaggctttgcaggaaggcgctgtccagcttgcagcgaatatcttccgaagcattcaagat
cagggcgtcctggacatcaagctcggttccattcattcgagcaaggggcagacccacact
gctacgctcgtgctcgaaacctacagtcacgaacacttcatcgacagcctgctgccttgg
cttgctgggcaaaaaagtcacgggggtgtaaggccccggaaaagaatcgtccagcgcctg
cttgccatgtacgtggcaatgacccgcccgacacacctactgtgcttggccataagcaga
cgcacgctcggcgagggagaagagttcgagaccaactgcgtgcagcttcgtggacaaggt
tgggacattcagcatctgtag
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