Pseudomonas mediterranea: E3Z27_07500
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Entry
E3Z27_07500 CDS
T08284
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pmed
Pseudomonas mediterranea
Brite
KEGG Orthology (KO) [BR:
pmed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmed03009
]
E3Z27_07500
Enzymes [BR:
pmed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E3Z27_07500
Ribosome biogenesis [BR:
pmed03009
]
Prokaryotic type
rRNA helicases
E3Z27_07500
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
AAA_19
Abhydrolase_1
Motif
Other DBs
NCBI-ProteinID:
QHA81540
LinkDB
All DBs
Position
1686922..1688268
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AA seq
448 aa
AA seq
DB search
MFSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILN
RLIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK
VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECANRQQTM
LFSATTGGSGLREMVAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQHKEQIVNWLLAN
ETYEKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT
DVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER
YLKQSFERRTIKEVKGTYGGPKKVKASGKAVGAKKKKVDAKGDKKKTAAKAPTKRKTANR
PKTDAPALVSKDGMAPLKRRKPQAPAAE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
gtgttttccgaattcgccctgcacgaacgcctgctcaaagccgtggccgagcttaaattt
gtcgagccaacgccggtgcaggcagcggccattccgctcgcgctccaggggcgtgacctg
cgggtgacggcgcagaccggcagcggcaagaccgccgcgttcgtgttgccgatcctcaac
cgcctgatcggcccggccaaggtccgtgtcagcatcaagaccctgatcctgctgccgacc
cgtgaactggcccagcagaccttgaaggaagtggagcgcttctcgcaattcaccttcatc
aagtccggcctgatcaccggcggcgaagacttcaaggtccaggccgccatgctgcgcaag
gtgccggacatcctcatcggtacgccggggcggatgatcgaacagctgaacgccggcaac
ctggacctgaaggaagtcgaagtgctggtactggacgaagccgaccgcatgctcgacatg
ggctttgccgaagacgtgcagcgcctggtggacgaatgcgccaaccgccagcagaccatg
ctgttctccgccaccaccggcggttcgggcctgcgggagatggtcgccaaggtgctgaac
aacccggagcacctgcagctcaacgcggtcagccaactgaattccaccacccgccagcag
atcatcaccgcggatcacaaccagcacaaagagcagatcgtcaactggctgctcgccaac
gaaacctacgaaaaagccatcgtgttcaccaacacccgggccatggccgaccgcatctat
ggccgcctggtggcacaggaatacaaggcgttcgtgctgcacggcgagaaggaccagaag
gatcgcaagctggcgatcgatcgcctcaagcaaggcggcgtgaagatcctcgtggccacc
gacgtcgccgcgcgcggcctggacgtggaaggcctggacctggtcatcaacttcgatatg
ccccgcagcggtgacgaatacgtgcaccgcatcggccgtaccggtcgcgccggcaacgac
ggcctggcgatctcgctgatctgccacggcgactggaacctgatgtcgagcatcgagcgc
taccttaagcagagcttcgagcgtcgcaccatcaaggaagtcaaaggcacctacggcggg
ccgaaaaaggtcaaggcctccggcaaagccgttggcgcgaagaagaaaaaggtcgacgcc
aagggcgacaagaagaaaaccgccgccaaggccccgaccaagcgcaagaccgccaaccgc
ccgaagaccgacgctccggcgctggtcagcaaggacggcatggcccccctcaagcgccgc
aagccgcaagcgccggcggctgagtga
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