Pseudomonas mediterranea: E3Z27_08675
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Entry
E3Z27_08675 CDS
T08284
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmed
Pseudomonas mediterranea
Pathway
pmed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3Z27_08675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmed03019
]
E3Z27_08675
03009 Ribosome biogenesis [BR:
pmed03009
]
E3Z27_08675
Enzymes [BR:
pmed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E3Z27_08675
Messenger RNA biogenesis [BR:
pmed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E3Z27_08675
Ribosome biogenesis [BR:
pmed03009
]
Prokaryotic type
rRNA helicases
E3Z27_08675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
QHA81758
LinkDB
All DBs
Position
1957382..1959055
Genome browser
AA seq
557 aa
AA seq
DB search
MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALNLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPIPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctcttgaacttcatcccaatattgtcgctgca
gtagtcgctaccggctatgaagagccttcggccattcagcagcagtcgatcccgatcatt
ctcgccggtcacgatatgattggtcaggcgcaaaccggtacgggtaagaccgccgcgttc
gccttgcctatcctgcaccgcattgatccgtccaagcgcgagccgcaagctctgatcctg
gccccaacccgtgagttggcgctgcaagttgcaactgctttcgaaacctacgccaagcaa
atgccgggcgtaacggttgtggctgtctacggcggcgcgccgatgggcccacaattgaaa
gccatccgtaatggcgcacaaatcgttgtcgccacccctggccgtctgtgcgaccacctg
cgtcgcgacgagaaagtcctggccaccgtgaaccacctggttctcgacgaagccgacgaa
atgctcaagctgggcttcatggatgacctggaagtgatcttcaaggccatgccggaaacc
cgtcagaccgtactgttctcggccaccctgccgcagtcgatccgtgcgatcgccgagcgt
cacctgaaagacccgaaacacgtcaagatccagagcaagacccagaccgtcaccgcgatc
gaacaggctcacctgttggttcacgccgaccagaagacctccgctgtcctcagcttgctg
gaagtggaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagcgccctggaagccaaaggctacaaggctgctgcgctgaacggtgacatcgcc
cagaaccagcgcgagcgcgtgatcgactccctcaaggatggtcgcctggacatcgttgtg
gcgaccgacgtggctgcccgtggcctggacgttccgcgcatcacccacgtgttcaacgtg
gacatgccgtacgatcctgaatcctacgttcaccgtatcggccgtaccggtcgtgccggt
cgtgaaggtcgcgcactgttgctggtgacgccgcgcgagcgtcgcatgctgcaggtgatc
gagcgtgtcaccgggcagaaggtggccgaggttcgcctgccggacgcccaggccgttctc
gatgctcgcatcaagaagctgaccaacagcctgtcgccactggtggctgacgccgaatcg
acccacggtgatctgctcgatcgcctgactgccgacatcggttgcagcccacgtgccctg
gccgccgccctgctgcgcaaggccaccaatggtcaggcgttgaacctggctgccatcgag
aaggaacgtcctctggtgccgaacagtgcaccacgtggcgatcgtcccgagcgtagcggt
gaccgtccggaccgtggcgaccgcgagcgtcgtgcaccgatcccgctggccgaaggccgt
gcccgttgccgtaccgccctgggtgcccgtgacggcatcgctgccaagaacctgctgggc
gcgatcctcaacgagggtggcctggcccgtgaagccatcggtcgcatccaggtgcgtgac
agcttcagcctggtggaactgccggaagatggtctggagaaattgctgaccaagctcaag
gacacccgcgtagccggcaagcaactcaagctgcgtcgttatcgcgaagactga
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