Pseudomonas mediterranea: E3Z27_09010
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Entry
E3Z27_09010 CDS
T08284
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
pmed
Pseudomonas mediterranea
Pathway
pmed00550
Peptidoglycan biosynthesis
pmed01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pmed00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
E3Z27_09010 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pmed01002
]
E3Z27_09010 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pmed01011
]
E3Z27_09010 (dacB)
Enzymes [BR:
pmed01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
E3Z27_09010 (dacB)
Peptidases and inhibitors [BR:
pmed01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
E3Z27_09010 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
pmed01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
E3Z27_09010 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Motif
Other DBs
NCBI-ProteinID:
QHA81818
LinkDB
All DBs
Position
complement(2032362..2033828)
Genome browser
AA seq
488 aa
AA seq
DB search
MIKSLRPLLLASLFLPLALPASTSAATINTALSPNVQKALKTSKLQDDALSLVMVPLNGP
GTPTLYNADVSVNPASTMKLVTTYAALEMLGPNHQWKTEFYTDGTLSGGILNGNLYLKGG
GDPKLNMEKLWLLMRDLRANGVQQVTGDLVLDRGFFIQPQLPEFNDDGNDENKPFLVKPD
SLLVNLKALRFVARNDGGRVLVSVEPPIASIHIDNQVKAVNSKQCAGGVRYNPVPQPDGS
VAVTVGGQLGDGCSSQTYLSLLDHATYTAGAVRAIWKELGGSIQGKDRLAPTPSNAKVLA
RAFSPDLAEIIRDINKYSNNTMAQQLFLSLGAQFRNEADGDDAKAAQRVVRQWLAKKGIT
APHLVMENGSGLSRAERVSAREMAAMLQAAWRSPYAAEYISSMPIVGTDGTMRKRLKTTA
MAGEAHIKTGTLNTVRAIAGFSRDVNGNTWAVVAILNDPKPWGASSVLDQVLLDLYRQPK
LPQTASVL
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaatctttgcgtccactgctcctggccagcctttttcttcccctggccctcccc
gcttccaccagcgccgccacgatcaacaccgccctgtcgcccaatgtgcagaaggccctc
aagaccagcaagctgcaagacgacgcgctgtccctggtgatggtgccactcaatggcccc
ggcaccccgaccctctacaacgccgacgtctcggtcaatcctgcctccaccatgaaactg
gtgaccacctacgccgccctggaaatgctcggccccaatcaccagtggaagaccgagttc
tacaccgacggcaccctcagcggcgggatcctcaacggcaacctgtacctcaagggcggc
ggcgaccccaagctgaacatggaaaagctctggctgctgatgcgcgacctgcgcgccaac
ggcgtacagcaggtcaccggcgacctggtgctcgaccgcggtttcttcatccagccgcag
ttgcccgagttcaacgacgacggcaacgacgaaaacaagcctttcctggtcaagcccgac
tccctgctggtcaacctcaaggcgctgcgcttcgttgcccgcaatgacggcggccgggtg
ctggtgtcggtggagccgccgattgccagcatccatatcgacaaccaggtcaaggcggtc
aactctaagcaatgcgccggcggcgtgcgctacaacccggtaccccagccggacggcagc
gtggccgtgaccgtcggcgggcagttgggcgatggctgcagctcccagacctacctgtcg
ctgctggaccacgccacctacaccgccggtgcggtgcgggcgatctggaaggaactgggc
ggcagcattcagggcaaggatcgtctggccccgaccccgagcaacgccaaggtgctggcc
cgggcgttctcgccggacctggcggagatcatccgcgacatcaacaaatacagtaacaac
accatggcccagcagttgttcctgagcctcggtgcgcagttccgcaacgaagccgacggt
gacgacgccaaggccgcgcaacgggtcgtgcgccaatggctggccaaaaaaggcattacc
gcgccgcacctggtgatggagaacggctccggcctgtcccgcgccgaacgggtcagcgcc
cgggaaatggcggcgatgctgcaagccgcctggcgcagcccctatgcggccgagtacatc
agttcgatgccgattgtcggcactgacggcaccatgcgcaaacgcctgaagaccacggcc
atggccggcgaagcccacatcaagaccggcaccctgaacaccgtgcgcgccatcgccggg
ttcagtcgtgacgtcaacggcaatacctgggcggtagtcgcgatcctcaacgatccgaag
ccatggggtgcttcgtcggtgctggaccaggtgctgctggatctgtaccgccagccgaaa
ctgccgcagacggcttcggtgctttga
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