Pseudomonas mediterranea: E3Z27_09310
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Entry
E3Z27_09310 CDS
T08284
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pmed
Pseudomonas mediterranea
Brite
KEGG Orthology (KO) [BR:
pmed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmed03032
]
E3Z27_09310 (topA)
03400 DNA repair and recombination proteins [BR:
pmed03400
]
E3Z27_09310 (topA)
Enzymes [BR:
pmed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
E3Z27_09310 (topA)
DNA replication proteins [BR:
pmed03032
]
Prokaryotic type
DNA Topoisomerases
E3Z27_09310 (topA)
DNA repair and recombination proteins [BR:
pmed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
E3Z27_09310 (topA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
QHA81872
LinkDB
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Position
2107868..2110480
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AA seq
870 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
APALSAKEKARKQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSEPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGAS
VRFEVAREKGEAFKPLNEAQAMAALEKLKASTYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVSMARTYIESEFGKKYLPDTPN
VYSSKEGAQEAHEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
SVGAGDFELRAKGRILKFDGYTRVMPQITKPGDDDVLPDMAQGDVMKLIKLDPTQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEEHLDDVAQGERDWKNVLDEFYGDFKKKLEVAESPDSGMRANQPVMT
DIPCLTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLRSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVMELLPHKDEIDPKYHFLCEAPQKDPDGRPAVIRYSRKTK
EQYVQTEVDGKPTGWKAYYDGGKWTVEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtat
ctgggcaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaggagccagccgccaagcgcggcaaggcggctgctggtgaa
gcgccggcgctgtcggcaaaggaaaaggcgcgcaagcaactggtctcacgcatgggggtc
gatccggaacacggctggaaagccaagtacgagatcctcccgggcaaggaaaaagtcatc
gaagaactgcgtcggctcgctaaagatgccgacaccatctatctcgcgacggacttggac
cgcgaaggggaagccattgcctggcacctgcgcgaagccatcggtggcgatgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaggccatccaggaagcgttttccgag
ccgggtgagctggacatcgaccgggtcaatgcccagcaggcgcgtcgtttcctcgatcgc
gtggtgggctacatggtttcgccgttgttgtgggccaagatcgcccgtggcctgtccgcc
ggacgggtgcagtcggtggcggtgaagctggtggtggaacgcgagcgggagatccgcgcg
ttcatccctgaagagtactgggaagtccacgcggacctgggcaccgccaagggcgccagc
gtgcgcttcgaagtggcccgggaaaaaggcgaagccttcaagccactgaacgaagcccag
gccatggcggccctggagaaactcaaagcctccacgtacagcatcgtcaagcgtgaggac
aagcccaccagcagcaagccatcggcgccgttcatcacgtccacactgcagcaggccgca
agcaaccgcctgggcttcggtgtgaagaaaaccatgatgatggcccagcgtctgtacgaa
gccggctacatcacctatatgcgtaccgactcgaccaacctctcggccgatgctgtgtcg
atggcgcgcacttatatagaaagcgagttcggcaagaagtacctgccggacacgccgaac
gtctacagcagcaaggaaggcgcacaagaggctcacgaagcgattcgtccttccgatgcc
aacaccgagccgagcaagttgtcaggcatggagcgcgatgccgagcgtctctacgagctg
atctggcgccagttcctggcttgccagatgctgccggcgcaatacctgtccaccaccgtc
agtgtcggcgccggggatttcgagctgcgcgccaagggccgcatcctgaaattcgacggt
tatacccgcgtcatgccgcagatcaccaagcctggggacgacgacgtcttgccggacatg
gcccagggcgacgtgatgaagctgatcaagctcgatccgacccagcatttcaccaagccg
ccggctcgttactcggaagccagcctggtcaaggaaatggaaaaacgcggcatcggtcgt
ccttcgacctatgcggcgatcatttcgactatccaggatcgcggctacgtggcgctgcac
aaccgtcgcttctattcggaaaagatgggcgacatcgtgaccgagcggttgtccgaaagc
ttctcgaacctgatggactacggcttcaccgccggcatggaagagcatctcgacgatgtg
gcccagggtgagcgggactggaagaacgtcctcgacgagttctatggcgacttcaagaaa
aaactcgaagtggccgaaagccctgacagtggcatgcgggccaaccagccggtgatgacc
gacattccgtgcctgacctgcggtcggccgatgcagatccgtaccgcgtccactggcgtc
ttcctggggtgctcgggctacagcctgccgcccaaggaacgctgcaaggcgacggtcaac
ctggtgcccggcgatgaaatcgccgcggacgacgagggcgagtccgaatccctggtgctg
cgtggcaagcatcgctgcccgatctgcagcacggcgatggacgcctacctgctggatgaa
aagcgcaagctgcacatctgcggtaacaacccggattgcgcgggctacgagatcgaagag
ggcacctatcgcatcaagggctacgaagggccgagcctggaatgcgacaagtgtggcagc
gagatgcagctcaagaccggccgtttcggcaagttcttcggctgcaccaacccgacctgc
aagaacacgcgcaagctgctcaggagcggtgacgccgcgccgccgaagatggacccggta
aaaatgccggagctcaagtgcgagaaggtcaacgacacctacatcctgcgtgatggtgcg
tccggcctgttcctggcggccagtcagttcccgaaaaaccgcgagacccgcgcacccttg
gtgatggagctcttgccgcacaaggacgagatcgatccgaagtaccatttcctctgcgaa
gcaccgcagaaggatccggacggccgcccggcggtgattcgctacagccgcaagaccaag
gagcaatacgtgcagaccgaagtcgacggcaagcctacgggctggaaggcgtactacgac
ggcggtaaatggacggtggaagacaagcgctga
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