Pseudomonas mediterranea: E3Z27_15050
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Entry
E3Z27_15050 CDS
T08284
Name
(GenBank) L,D-transpeptidase family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
pmed
Pseudomonas mediterranea
Brite
KEGG Orthology (KO) [BR:
pmed00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pmed01002
]
E3Z27_15050
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pmed01011
]
E3Z27_15050
Peptidases and inhibitors [BR:
pmed01002
]
Cysteine peptidases
Family C82
E3Z27_15050
Peptidoglycan biosynthesis and degradation proteins [BR:
pmed01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
E3Z27_15050
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
QHA82899
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Position
complement(3474073..3475644)
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AA seq
523 aa
AA seq
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MFKKPVCYLSLLLLASPLVATAGDVPFGDPPPVQATLARLSVACPALAAGVDFPTMLSLQ
AFYQQNAGQAVWSDDERLMALRVQLQQLADDGLDPARYSLPAADTSLSPDCVDIAISQRY
LQALHELRFGYLSQDRLEPVWKASPQPQDRQAMILAIAAPGLNNLAAAFDQARPSLDLYR
NLRVLYAQQRQQPLAEWQAVPAGALLQPDKQDARVPALARRLFSEGYLSAPPAEGDEHYS
PSLVEAMKSFQLRHSLQADGVVGPWTVTELNVSPAMRREQLRINLERMRWLAQDLESDSV
LVNVAAAQLTVYQGGAPVWQTRTQVGRAGRETPLLKSRVTRLTLNPTWTIPPTILKEDKL
PEIRRDPEFLSRQNLKIIDRDGLPLLAEDIDWDHPGDLMLRQDAGPKNPLGKLVIRFPNP
FSVYLHDTPSQALFSKGPRAFSSGCVRIEQVMHLRDLLVTPAERLRTDTLLADGQTHEFR
LTRPMPILLGYWTVQADSQGQAVYVPDVYGRDGKLAAARGRAL
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
ttgttcaaaaagcccgtatgttacttgagccttttattgctcgcttcgccattggtcgcg
acagccggtgacgttccgtttggcgatccaccccctgtacaggccacgctggcccggtta
tcggtggcttgcccggcgctggccgcgggtgtcgactttccgacgatgctgagcttgcag
gcgttctaccagcaaaacgccggccaggcagtctggtcggacgacgaacggttgatggcc
ttgcgggtccagttgcagcaactggccgatgacggactggacccggcccgctacagcctg
ccggccgccgatacgtccctgagtccggactgtgtcgatatcgccatcagccagcgctac
ctgcaggccttgcacgaactgcgtttcggctatttgtcccaggaccgcctcgagccggtg
tggaaggccagtccacagccccaggaccgccaggcgatgatcctggccattgccgccccc
ggtttgaacaacctggccgcagcctttgaccaggcgcgcccgagcctggacctttaccgc
aacctgcgggtgctttatgcccagcagcggcaacagcccttggccgaatggcaagcggtg
cccgcaggtgccctgttgcaaccggacaaacaggacgcccgggtaccggcgctggcgcga
cggctgttcagcgaaggctacctgagtgcgccgccggccgagggcgatgagcattacagc
ccaagcctggtggaggcgatgaaaagcttccagctgcggcattcgttgcaagccgacggc
gtggtggggccgtggactgtcaccgagctgaacgtcagcccggccatgcgccgcgagcag
ttgcggatcaatctggagcgcatgcgctggctggcccaggacctggagtctgacagtgtg
ctggtcaacgtggcggcggcccaactgacggtgtaccagggcggcgcaccggtctggcaa
acccggacccaggtgggccgggcggggcgggaaacgccgttgctcaaatcccgggtgaca
aggttgaccctcaatcccacctggaccatccctccgaccatcctcaaggaagacaagctg
ccggagatccgccgcgaccccgagttcctcagtcggcagaacctgaagatcatcgatcgc
gatggcctgccgctgctggccgaggacatcgactgggatcatcctggcgacctgatgctg
cgccaggatgccggaccgaagaatccgctgggcaaactggtgatccgcttccccaacccg
ttttccgtgtacctgcacgacacgcccagccaggcgctgttcagcaaggggccgcgggcg
ttcagttcggggtgtgtgcggatcgagcaggtgatgcacctgcgggatctgctcgtgacc
ccggccgagcgcttgcgcaccgacaccctgctggccgacgggcagacccatgagttcagg
ttgaccaggcccatgccaatcctgctgggttactggaccgtacaggcggacagccagggc
caggcggtgtacgtcccggatgtctatgggcgggatgggaaactggctgctgctcgcggc
cgagcactctga
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