Pseudomonas mediterranea: E3Z27_16185
Help
Entry
E3Z27_16185 CDS
T08284
Name
(GenBank) mannuronan epimerase
Organism
pmed
Pseudomonas mediterranea
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HemolysinCabind
He_PIG
Peptidase_M10_C
Pect-lyase_RHGA_epim
Beta_helix
Big_9
NosD
T7-like_Y65
TTc_toxin_rep
End_N_terminal
Motif
Other DBs
NCBI-ProteinID:
QHA83101
LinkDB
All DBs
Position
3839543..3845152
Genome browser
AA seq
1869 aa
AA seq
DB search
MIFNVQNFGAKGDGITDDTAAIQAAIDAAAAAGGGEVYVPAGTYIVSGGEEPSDGCLMLK
SNVHLYGDGMGETTVKVADGSDTKITGVIRSAYGEETHDFGISQLTIDGNRDHTTGKIDG
WFNGYIPGEEGYDSNVTIDSVEIKDCSGYGFDPHEQTVNMVIKNSVSHGNGLDGFVADFL
SDSTFENNVAYDNDRHGFNVVTSTHDFTLTNNVAYDNGGNGIVVQRGSENIPSPSNITIT
GGEVYGNGAEGVLIKLSSEVTVTGVDIHDNASAGVRVYGSNHVEILDNTLNNNSLGGAVP
EIIIQSYDDTLGVSGKYFNGSDNTIQGNLISGSDLSTYGVAERNEDGTDRNAIIANTISH
TSKGATLIYGDGSYVSATAPMTTVQGTAGNDTLLGTSASEIFYGGAGNDTINGAAGGDIL
VGGAGVDKLTGGTGADTFRFASQSDSYRNATTSFDDTITDFDVTQDKIDLAGLGFTGLGN
GRGGTLQVSYSASNDRTYIKDFDADASGNRFELILSGNLASTLTANNFIFNRVITGTSGN
DSLSGSDSADTLLGLAGNDSLNGGAGDDKLDGGAGMDTLTGGAGADTFVFSNRLDSYRNY
NTGGVNLGDLITDFNVASDKIDLSALGFTGLGDGKNDTVYLVLNSAGTKTYIKSLTADAN
GNRFEVALDGNYLNTLTSANFVFATSSPTNHAPVVATPLLDQSATENTPFSYVVPATSFS
DPDNDSLSYTAKLADGSALPSWLVFDAATRTFSGTPSDTASGTYAIQVTATDGSNATVSD
SFTLAVQDVPTSVVINGTPNNDTLTGTAANEQLFGGAGNDTLNGGAGNDILVGGTGVDKL
TGGTGADVFRYTSKLDSYRTSSTSASDQILDFDVAADKIDVSALGYTGLGNGLNGTLQLT
YSATSNRTYLKDLTVDANGNRFEVSLAGNLVSSLTASHFVFADQNSPGNVAPVVAIPLLD
QTASESTPFRYTVAHDSFTDANQDVLTYTATLADGRALPAWLTFNATSLTFSGTPTSTAS
GSYDVLVKATDPSGASVSDNFALVVADAPANTITGTSSAETLNGTAGADLILGLGGNDTI
KAGTGADIVDGGAGRDSLYGGDGADTFRYTNVFDSYRDYDTGGVTATDTVYDFTVGVDKI
DVSSLGFIGLGDGTNGTLYMTLNSAGDKTYIKSAEADADGNRFEIALNGNYLNTLTASDF
VFGERAQQDILYLPTLGQSNARLLRMTEDDDQSGTSMLVKDLDRYTTYDVRSQFTDADGN
GIDIAVGGSTVNGLSTLGPEELKLCWWLTDTNQPGPALLRAVTLLKDQLSELKAIDNVTM
GIIWGQGEEGAQEIARATDKQAAAAAYKAATLKVFDYLHAQLGNFDVYLMETGHYEQDAA
RARGYSEEKIAAIVEGVGYVRATQEAMAAERADVKLAVDYTDLPLRYEVDPLVYPDDVWH
LHEESAEIVGQRLADYIADDLGFHGDPNDNNSVQDIFDHANQGGMISGTDQADTLVGSSG
NDTLDGDLGADSLTGGDGNDIYVVDNAFDSVVETNTSTSQIDTVKASVSWTLGANLENLV
LTGVSEIDGTGNERRNFITGNIANNVLDGAAGNDSMSGGDGNDTYYVDNTGDTVIETNSN
PLTGGIDSVHSRLASYTLTSNVENLYIDTPDAANGTGNTLDNTLFAGAGNNVLDGREGND
TVSFAQALAGVTVTLSTSAQQNTIGSGLDTLKNFENLTGSAYADTLTGNSGGNILDGGAG
NDTLVGGSGDDRLIGGAGTDNLTGGTGADTYVFGALADMGTGTLRDVINGFKSAELDHLD
LTGLDANPLTANIDAFTFIGSNAFDATNATGQLRFADGILYGSVDADATAEFEFELVGVK
ELHASDFTA
NT seq
5610 nt
NT seq
+upstream
nt +downstream
nt
atgattttcaacgttcaaaattttggcgccaaaggagacggtattaccgatgacaccgcg
gccatccaggcagcgattgacgcggcggcagcggcaggtgggggcgaggtgtatgtgcca
gccggaacctacatcgtttcggggggcgaggaaccttccgacggttgcctgatgctcaag
agcaacgtccacctgtatggcgacggcatgggcgagaccaccgtcaaggtggccgacggc
tccgataccaagatcaccggcgtcatccgctccgcctacggcgaagagactcatgatttc
ggcatcagccaactcaccatcgacggcaaccgcgaccacaccaccggcaagatcgacggt
tggttcaacggttacattcccggcgaagaaggctacgactccaacgtcaccatcgacagc
gtcgagatcaaggactgctccgggtacggcttcgacccccacgagcagaccgtcaacatg
gtcatcaagaacagcgtgtcccatggcaatggcctggacggcttcgtggccgacttcctc
agcgacagcaccttcgagaacaacgtcgcctacgacaacgaccggcacggcttcaacgtc
gtcaccagcacccacgacttcacccttaccaacaacgtcgcctatgacaacggcggcaac
ggcatcgtggtacagcgcggcagcgagaacatcccctcccccagcaacatcaccatcacc
ggcggcgaggtgtacggcaacggcgccgaaggcgtgctgatcaaactgtccagcgaagtg
acggtcaccggcgtcgacatccacgacaacgccagcgccggggtacgcgtctacggcagc
aaccacgtcgagatcctcgacaacaccctcaacaacaattccctgggcggcgcggtcccc
gagatcatcatccagtcctacgacgacaccctgggcgtctccggcaagtacttcaacggc
agcgataacacgatccagggcaacctcatcagcggcagcgacctgtcgacctatggcgtg
gccgagcgcaacgaggacggcaccgatcgcaacgcgatcatcgccaacaccatcagccac
accagcaagggcgccacgctgatctatggcgatggcagctacgtcagcgccacggcaccg
atgaccaccgtacaaggcacggccggcaacgacacgctgctgggcaccagcgccagcgag
atcttctacggcggcgccggcaacgacaccatcaacggcgccgccggtggcgacatcctg
gtgggcggcgcgggcgtcgacaaactcaccggcggcacgggcgccgacacgttccgcttc
gccagccagtccgacagctaccgcaacgcgaccaccagcttcgacgacaccatcaccgat
ttcgacgtcacccaagacaagatcgacctggccggcctgggctttaccggcctgggcaac
ggtcgtggcggcaccttgcaggtcagctacagcgccagcaacgaccgcacctacatcaag
gacttcgacgccgatgccagcggcaatcgcttcgagttgattctctccggcaacctcgcc
agcaccctgacggcaaacaatttcatcttcaaccgggtgatcaccggcaccagcggcaat
gactcgctatcgggcagcgactcggccgataccctgctcggcctggcgggcaacgacagc
ctcaatggcggcgccggcgatgacaagctcgacggcggggccggcatggacaccctcacc
ggcggtgccggggcggacaccttcgtgttttccaaccgtctggacagctaccgcaactac
aacaccggcggcgtcaacctgggcgacctgatcaccgacttcaatgtcgcctccgacaag
atcgacctgtcggccctgggcttcaccggcctgggggacggcaagaacgacaccgtgtac
ctggtgctcaatagcgccggcaccaagacctacatcaagtccctgaccgccgacgccaat
ggcaaccgcttcgaagtggccctggacggcaactacctgaacacgctgaccagtgccaac
ttcgtcttcgcgacgtcgtcgccgaccaaccatgcaccagtggtggcgacgccgctgctg
gaccagagtgcgacggaaaacacaccgttcagctacgtggtgccggccaccagtttcagc
gatccggacaacgacagcctcagctacaccgccaaactggccgacggcagcgccctgccc
agctggctggtgttcgatgccgccacgcgcacgttcagcggcacgccaagcgacaccgct
tcgggcacctacgccatacaagtcaccgccacggacggcagcaacgccaccgtcagcgac
agtttcaccctcgccgtgcaggacgtgcccacttccgtcgtcatcaacggcacgccgaac
aacgacacgctgaccggcaccgcggccaacgaacaattgttcggtggcgccggaaacgac
acgctcaatggcggggccgggaacgacatcctggtcgggggtaccggagtggacaaactc
accggcggcacgggtgccgatgtgttccgctacacctcgaagctcgacagctaccgcacc
agttccaccagcgccagtgaccagatcctcgacttcgacgtggccgccgacaagatcgat
gtctcggcgctcggctacaccggcctgggcaatggactgaatggcaccctgcaactgacc
tacagtgccacgtccaaccgcacctacctcaaggacctgaccgtcgatgccaacggcaac
cgcttcgaagtgtcgctggcgggcaacctggtcagcagcctgacggccagccacttcgtg
ttcgccgaccagaacagccccggcaacgtggcgccagtcgtggccattccgctcctcgac
cagaccgccagcgaaagcacgccgttccgctacaccgtggcccacgacagcttcaccgac
gccaaccaggacgtgttgacctacaccgcgaccctcgccgacggcagggccctgcccgcg
tggctgacgttcaatgccaccagcctgaccttcagcggcacgccgaccagcaccgcatcc
ggtagctatgacgtgctggtcaaggccaccgatccttccggtgcctcggtcagcgacaac
ttcgccctggtagtggccgatgccccggccaacaccatcaccggaaccagcagcgccgag
accctcaacggtaccgccggcgcggacctgatcctcggcctgggcggtaacgacacgatc
aaggccggcaccggtgcggacatcgtcgacggcggcgccggacgcgactccctgtatggc
ggcgatggcgccgataccttccgctacaccaacgtgttcgacagctaccgcgactacgac
accggtggcgtcacggccaccgacacggtctatgacttcaccgtgggcgtggacaagatc
gacgtgtccagcctgggcttcatcggccttggcgacggcaccaacggcacgctgtacatg
accctgaactcggccggcgacaagacctacatcaagtccgccgaagccgatgccgatggc
aaccgcttcgagatcgccctcaacggcaactatctcaacactctgaccgccagtgatttc
gtgttcggcgagcgcgcccagcaagacatcctctacctgccgaccctcggccaatccaat
gcacgcctgctgcgcatgaccgaggatgacgatcaatccggcacctcgatgctggtcaag
gacctggaccgctacaccacctatgacgtacgcagccagttcaccgacgccgacggcaat
ggcatcgacatcgcggtgggcggcagcaccgtcaacggcctgtcgacgctgggccccgaa
gagctgaagctgtgctggtggctgaccgacaccaaccagcccgggcccgcgctgttgcgc
gccgtgacattgctcaaggaccaactcagcgaactcaaggccatcgataacgtcaccatg
ggcatcatctggggccagggcgaggaaggcgcccaggagatcgcccgcgccaccgacaag
caggccgcggccgctgcctacaaggccgcgacactgaaggtattcgactacctgcatgcg
cagctcggcaatttcgacgtgtacctgatggaaaccggtcactacgagcaggacgcggcg
cgagcccgtggctattccgaggaaaagatcgccgcgattgtcgaaggggtcggctatgtc
cgcgccacccaagaagccatggcggccgagcgcgccgacgtcaagctggcggtggactac
accgacctgccgttgcgctacgaagtcgatccgctggtgtacccggacgacgtctggcat
ctgcacgaggaatcggcggaaatcgtcggccagcgactggctgactacatcgccgatgac
ctgggcttccatggcgatcccaacgacaacaacagcgtgcaggacatcttcgaccacgcc
aaccagggcgggatgatctcaggtaccgaccaggcggataccctggtgggcagctcgggc
aacgacaccctggatggcgacctgggggcggactccctgaccggtggcgacggcaatgac
atctacgtggtcgataacgccttcgacagtgtggtggaaaccaacacctcgacctcgcag
atcgatacggtaaaggcctcggtgagttggacactgggggccaatctcgagaacctggtg
ctcaccggcgtctcggagatcgatggcaccggcaatgaacgacgcaatttcatcaccggc
aatatcgccaacaacgtgctcgacggagccgccggcaacgacagcatgagcggtggcgat
ggcaatgacacgtactacgtcgacaataccggcgacacggtgatcgaaaccaacagcaat
ccgctgaccggaggcatcgacagcgtgcacagccgcctggcgagctataccctcaccagc
aacgtcgagaacctgtacatcgacacgcccgacgcggccaacggcacgggcaatacgctg
gacaacacgttgttcgccggggccggaaacaacgtgctggacgggcgtgaaggcaacgac
acggtgtccttcgcgcaggcgctggcgggggtgaccgtgacgctctcgacgtcggcgcaa
cagaacaccataggctcgggcctcgatacgttgaagaacttcgagaacctgaccggcagt
gcctacgccgacacgctgaccggcaacagcggcgggaacatcctggatggcggcgccggc
aacgatacgctggtgggtggctcgggggatgaccgcttgatcggcggtgccgggaccgac
aacctcaccgggggtaccggcgcggacacctacgtgttcggagcgctggcggacatgggc
accgggacgttgcgcgatgtgatcaacggcttcaagagcgctgaactggaccacctggat
ctcaccgggctggacgccaacccgttgaccgccaatatcgatgccttcaccttcattggc
agcaatgccttcgacgccaccaacgccaccggccagttgcgctttgccgacggcattctc
tacggcagcgtcgacgccgacgctaccgccgagttcgagttcgaactggtcggcgtcaag
gagctgcatgccagcgatttcacggcgtga
DBGET
integrated database retrieval system
